miR-Intess: cbr-mir-90

cbr-mir-90

Cloning frequencies
absolute	AF16
cbr-mir-90 3arm	377
normalized	AF16
cbr-mir-90 3arm	0.983

block1853 (miRBase cbr-mir-90) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-90	0.001	no	no	0.28/0.43	18/23/0.97	0.0	0.3	330	0	1	0	18	7	3arm	1	nd	0.14	1	377	1	na	na

Families
Member of family miR-50/62/90 (seed GAUAUGU): cel-mir-90, cbr-mir-50, cbr-mir-90, cbr-mir-62

		reads	miRBase family seed
seed	---------------------------------------------------------------------------GAUAUGU--------------------------------------------------	376	miR-50/62/90
seed	----------------------------------------------------------------------------AUAUGUU-------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
cbr-miR-90	--------------------------------------------------------------------------TGATATGTTGTTTGAATGCCCC------------------------------------	22	227
	--------------------------------------------------------------------------TGATATGTTGTTTGAATGCCC-------------------------------------	21	103
	--------------------------------------------------------------------------TGATATGTTGTTTGAATGCCCCT-----------------------------------	23	23
	--------------------------------------------------------------------------TGATATGTTGTTTGAATG----------------------------------------	18	13
	--------------------------------------------------------------------------TGATATGTTGTTTGAATGCC--------------------------------------	20	10
	---------------------------------------------------------------------------GATATGTTGTTTGAATGCCCC------------------------------------	21	1
cbriggsae	-----------CGCACTCA--TTTCAAGCGGCTTTCAACGACTATATCAACCAAA---TCAAGC-TAGATACGTTGATATGTTGTTTGAATGCCCCTTGAGA------------------TTTTGGAGTGTT
cremanei	TCTCCTTGTTTGGGCCTCA--CTTCGAGCGGTATTCAACGACTATCTCAACCGAT-ATACATAC-CAACCGAGTTGATATGTTGTTTGAATGCCCCTTGAACTCGAGGCCCCTAGTAAACACTCAGA-----
celegans	------AAAACGGGCGCCA--TTTCGAGCGGCTTTCAACGACGATATCAACCGACAACTCACACTTTTGCGTGTTGATATGTTGTTTGAATGCCCCTTGAATTGGATGCCACAGG-----TTTT--------
cbrenneri	-TCCTGGACTTGGGCGCCAAGTTTCGAGCGGCTTTCAACAACGATATCAACCGATTTTCAGTAA-ATTGCGAGTTGATATGTTGTTTGAATGCCCCTTGAGTTGGTTGCCCTTCTTG---TTTTAGGA----
cjaponica	-----------GGACGCCC-GACTCAAGCGGCTTTCAACGGCGCTATCAACCGAA---CTGTGT-GTCGCGTGTTGATATGTTGTTTGAATGCCCCTTGAATCGGCGGTCGCCCCTA---TCCTG-------
	* * * **** * * ****** * ****************************
	+++++ ++++++++ ++++++++++++++++++++++++++++++++++ ++++++ +++++++++++++++++++++++++++++++++++++ +++++++++++++++++	NM_001090393
	+++++ ++++++++ ++++++++++++++++++++++++++++++++++ ++++++ +++++++++++++++++++++++++++++++++++++ +++++++++++++++++	NM_001730
	----- -------- ---------------------------------- ------ ------------------------------------- -----------------	NM_070558
cbriggsae	.((((((( (((((((.(((.(((((((((.((((((((...( ((.... ..)))..)))))))))))).))))).))).))))))) )....)))))).	1.000 -38.30
cremanei	(((...((((((((((((. .((((((.(((((((((((((.((.(((((((.. ........ ....)).))))).)))))))).))))))).))))))...))))))).....)))))...)))	0.961 -43.94
celegans	(((((.((((((( .((((((.(((.(((((((((.((((((((((.(((.........))))).)))))))))))))).))).))).)))))).))).))))....) ))))	1.000 -43.70
cbrenneri	((((((((..(((((((((..((((((.(((.(((((((((.((((((((((((((.....)) ))))...)))))))))))))).))).))).))))))))))).)))).....) ))).))))	0.999 -48.60
cjaponica	((.((.(( ((.(((((.(((.((((((((((.(((((((((.( (..... ))..)).)))))))))))))).))).))).))))).))))))....)).... .....	0.984 -40.20

cbriggsae	chromosome:chrIII:13421064:13421160:1	Same_strand\|Intronic_non-coding\|NM_001090393\|Egr1 ## Opposite_strand\|Intronic_non-coding\|NM_070558\|rho-1 ## {Repeats: no} ## {MIR: cbr-mir-90}
cremanei	chromosome:chrUn:78012934:78013056:-1	intergenic
celegans	chromosome:chrIII:8873886:8873996:-1	intergenic ## {MIR: cel-mir-90}
cbrenneri	chromosome:chrUn:17772387:17772509:1	intergenic
cjaponica	chromosome:chrUn:4612015:4612120:-1	Opposite_strand\|Intronic_coding\|NM_080787 ## Same_strand\|Intronic_coding\|NM_078517 ## {SimpF: trf}

miR-Intess™

cbr-mir-90

block1853 (miRBase cbr-mir-90) [miRNAknown_cloningHIGH_randfoldOK]