C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

cbr-mir-62

cbr-mir-62

Cloning frequencies
absolute	AF16
cbr-mir-62 3arm	14
normalized	AF16
cbr-mir-62 3arm	0.036

cbr-mir-62 relative cloning frequencies

block4585 (miRBase cbr-mir-62) [miRNAknown_cloningOK_shortStem_mirtron_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-62	0.003	no	no	0.26/0.32	19/22/0.93	0.0	0.0	10	0	1	0	4	6	3arm	1	1	0.14	2	14	1	na	na

Families
Member of family miR-50/62/90 (seed GAUAUGU): cel-mir-90, cbr-mir-50, cbr-mir-90, cbr-mir-62

block4585 hairpin

		reads	miRBase family seed
seed	-------------------------------------------------GAUAUGU------------------	14	miR-50/62/90
		len	cloning frequencies
			AF16
cbr-miR-62	------------------------------------------------TGATATGTAATCTAGCTTACAG----	22	10
	------------------------------------------------TGATATGTAATCTAGCTTAC------	20	3
	------------------------------------------------TGATATGTAATCTAGCTTA-------	19	1
cbriggsae	GGCTATTATAAGGTGGGTTAGATCCCATATCCTTCCGCTTGATGGAAATGATATGTAATCTAGCTTACAGGTCT
cremanei	----------AGGTGGGTTAGATCCCATATCCTTCCGCGTAATGGAAATGATATGTAATCTAGCTTACAG----
	**************************** * *****************************
	------------------------------------------------------------------------------------	NM_001004313
	------------------------------------------------------------------------------------	NM_008873
	------------------------------------------------------------------------------------	NM_001088391
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>	NM_171786
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>	NM_077717
cbriggsae	((((........(((((((((((..((((((.(((((.....)))))..))))))..))))))))))).)))).	0.990 -25.20
cremanei	..(((((((((((..((((((.(((((.....)))))..))))))..)))))))))))..	1.000 -24.60

cbriggsae	chromosome:chrX:14261125:14261198:-1	Opposite_strand\|Intronic_non-coding\|NM_001004313\|TMEM220 ## Same_strand\|Boundary_coding\|NM_171786\|ugt-50 ## {Repeats: no} ## {MIR: cbr-mir-62}
cremanei	chromosome:chrUn:111447762:111447875:-1	Same_strand\|Boundary_coding\|NM_171786

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