cel-mir-90
| absolute | AF16 |
| cel-mir-90 5arm | 2 |
| cel-mir-90 3arm | 33 |
| normalized | AF16 |
| cel-mir-90 5arm | 0.005 |
| cel-mir-90 3arm | 0.086 |
sblock35 (miRBaseHomolog cel-mir-90) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog cel-mir-90 | 0.001 | no | no | 0.29/0.50 | 20/24/1.00 | 0.0 0.0 | 1.5 0.0 | 2 29 | 0 0 | 1 1 | 0 0 | 23 24 | 5 10 | 5arm 3arm | 1 1 | nd nd | 0.09 0.17 | 1 2 | 35 | 1 | 2 | 2 |
| Member of family miR-50/62/90 (seed GAUAUGU): cel-mir-90, cbr-mir-50, cbr-mir-90, cbr-mir-62 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------GAUAUGU---------------------------------------- | 33 | miR-50/62/90 |
| seed | ------------------------GGCCUUC--------------------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------------------------TGATATGTTGTTTTGAATGTCACT------------------------ | 24 | 29 | |
| ----------------------------------------------------------------------------TGATATGTTGTTTTGAATGTCAC------------------------- | 23 | 3 | |
| -----------------------CGGCCTTCAACGACTATATCAAC------------------------------------------------------------------------------ | 23 | 1 | |
| ----------------------------------------------------------------------------TGATATGTTGTTTTGAATGTC--------------------------- | 21 | 1 | |
| -----------------------CGGCCTTCAACGACTATATC--------------------------------------------------------------------------------- | 20 | 1 | |
| cbriggsae | AGATCCTGCAGCACCATTTCAAGCGGCCTTCAACGACTATATCAACCGA-----ATCCAAAT------TCGCGAGTTGATATGTTGTTTTGAATGTCACTTGAGGTTTTTGCTTTTTCGGATTT | ||
| cremanei | -------G-GGCCTCACTTCGAGCGGTATTCAACGACTATCTCAACCGATATACATACCAAC---------CGAGTTGATATGTTG-TTTGAATGCCCCTTGAACTCGAGGCCC---------- | ||
| celegans | ACAAAACG-GGCGCCATTTCGAGCGGCTTTCAACGACGATATCAACCGACA---ACTCACAC----TTTTGCGTGTTGATATGTTG-TTTGAATGCCCCTTGAATTGGATGCC----------- | ||
| cjaponica | ------------------------GGCTTTCAACGGCGCTATCAACCGA-----------ACTGTGTGTCGCGTGTTGATATGTTG-TTTGAATGCCC-------------------------- | ||
| ** ******* * * ******** * ** ************ ******** * | |||
| ------------------------------------------------------ -------- ------------------------------------------------------------- | NM_001090393 | ||
| ------------------------------------------------------ -------- ------------------------------------------------------------- | NM_001730 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_070558 | ||
| cbriggsae | ((((((...((((..((((((((.(((.(((((((((.((((((((((( ((....)) )))...)))))))))))))..)))).))).))))))))...)))).....)))))) | 1.000 -37.70 | |
| cremanei | ( ((((((..((((((.(((((((((((((.((.(((((((.............. )).))))).)))))) )).))))))).))))))...))))))) | 0.992 -41.74 | |
| celegans | ........ (((((((.((((((.(((.(((((((((.((((((((((.(( (....... ..))))).)))))))))))) )).))).))).)))))).))).)))) | 1.000 -41.50 | |
| cjaponica | (((.((((((((((.(((((((((. ((.....))..)).)))))))))))) )).))).))). | 1.000 -22.60 |
| cbriggsae | chromosome:chrIII:13422678:13422790:-1 | Opposite_strand|Intronic_non-coding|NM_001090393|Egr1 ## Same_strand|Intronic_non-coding|NM_070558|rho-1 ## {Repeats: no} |
| cremanei | chromosome:chrUn:78012950:78013045:-1 | intergenic |
| celegans | chromosome:chrIII:8873895:8873998:-1 | intergenic ## {MIR: cel-mir-90} |
| cjaponica | chromosome:chrUn:4611951:4612103:-1 | Opposite_strand|Intronic_coding|NM_080787 ## Same_strand|Intronic_coding|NM_078517 ## {SimpF: trf} |
©2008 InteRNA Genomics B.V.