cbr-mir-34
| absolute | AF16 |
| cbr-mir-34 5arm | 829 |
| cbr-mir-34 3arm | 1 |
| normalized | AF16 |
| cbr-mir-34 5arm | 2.161 |
| cbr-mir-34 3arm | 0.003 |
sblock76 (miRBase cbr-mir-34) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-34 | 0.005 | no | no | 0.50/0.58 | 18/22/0.97 | 0.0 0.0 | 0.0 0.0 | 696 1 | 0 0 | 1 1 | 0 0 | 17 19 | 5 7 | 5arm 3arm | 1 1 | nd nd | 0.14 0.16 | 1 2 | 830 | 1 | 2 | 0 |
| Member of family miR-34 (seed GGCAGUG): cbr-mir-34, block869_novel |
| reads | miRBase family seed | ||
| seed | -------------------------------------GGCAGUG---------------------------------------------------------------------------------------------- | 814 | miR-34 |
| seed | -----------------------------------------GUGUGGU------------------------------------------------------------------------------------------ | 15 | novel |
| seed | ------------------------------------------------------------------------------CGGCU----AC------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-34 | ------------------------------------AGGCAGTGTGGTTAGCTG-GTTG------------------------------------------------------------------------------- | 22 | 696 |
| ------------------------------------AGGCAGTGTGGTTAGCTG-GTT-------------------------------------------------------------------------------- | 21 | 106 | |
| ----------------------------------------AGTGTGGTTAGCTG-GTTG------------------------------------------------------------------------------- | 18 | 15 | |
| ------------------------------------AGGCAGTGTGGTTAGCTG-G---------------------------------------------------------------------------------- | 19 | 9 | |
| ------------------------------------AGGCAGTGTGGTTAGCTG-GT--------------------------------------------------------------------------------- | 20 | 3 | |
| ---------------------------------------------------------------------------A--CGGCT----ACCTTCACTGCCA-------------------------------------- | 19 | 1 | |
| cbriggsae | -------------------AAGCACTCATGGTCGTGAGGCAGTGTGGTTAGCTG-GTTGCATACACAGGTTGACAA--CGGCT----ACCTTCACTGCCACCCCGAACATGTAGTCCTC------------------- | ||
| cremanei | ------------------------------------AGGCAGTGTGGTTAGCTG-GTTGCATATTGA-ATTGACAA--CGGCT----ACCTTCACTGCCA-------------------------------------- | ||
| celegans | TACTGACTATTATTCTTATAACGGACAATGCTCGAGAGGCAGTGTGGTTAGCTG-GTTGCATATTTC-CTTGACAA--CGGCT----ACCTTCACTGCCACCCCGAACATGTCGTCCATCTTTGAACACTGGTGAGTG | ||
| cbrenneri | ------------------------------------AGGCAGTGTGGTTAGCTG-GTTGCATACTGACATTGACAA--CGGCT----ACCTTCACTGCCA-------------------------------------- | ||
| cjaponica | -----------CTCTCCACAATGGACGGTGCTCGGGAGGCAGTGTGGTTAGCTG-GTTGCATGATGT-TTTGACAA--CGGCT----ACCTTCACTGCCACCCCGATCATGTTGTCCATCTTTGAACATTGGTGAG-- | ||
| ppacificus | TAAGCTCCAGACTCTCTCCATTAGCACATG------TGGCAGTGCAATCGGCAGCCTCGCACTGGGG-CTCGCCGATTCGTCTCCACACCTTCTCTGAGA---------------------------------GAATC | ||
| ******* * ** * * *** * * * * ** ** ****** *** * | |||
| ----- ----------------------------------- --------------------- ----- -------------------------------- ----- | NM_076104 | ||
| ----- ----------------------------------- --------------------- ----- -------------------------------- ----- | NM_029999 | ||
| ----- ----------------------------------- --------------------- ----- -------------------------------- ----- | NM_022410 | ||
| ----- ----------------------------------- --------------------- ----- -------------------------------- ----- | NM_031169 | ||
| ----- ----------------------------------- --------------------- ----- -------------------------------- ----- | NM_001027419 | ||
| +++++ +++++++++++++++++++++++++++++++++++ +++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++ +++++ | NM_181850 | ||
| ----- ----------------------------------- --------------------- ----- -------------------------------- ----- | NM_022416 | ||
| ----- ----------------------------------- --------------------- ----- -------------------------------- ----- | NM_033509 | ||
| cbriggsae | .((.(((((((.(((.(.(((((((.(((.((((( .(((((.((....)))).))) ))))) )))..))))))).)..))).)))).))).)). | 1.000 -34.40 | |
| cremanei | .(((((((.((.(((((. ((((((...... ..)).))) ))))) )))..))))))). | 1.000 -26.50 | |
| celegans | ((((.((((...(((.......((((.(((.(((...(((((((.((.(((((. ((((((...... ..)).))) ))))) )))..)))))))....))).)))...))))......)))...)))).)))) | 0.880 -42.22 | |
| cbrenneri | .(((((((.((.(((((. ((((((.........)).))) ))))) )))..))))))). | 1.000 -25.70 | |
| cjaponica | (((.(((((((((((((((.(((((.(((((((.((.(((((. ((((((...... ..)).))) ))))) )))..)))))))..))))).)))..)))))))...)).....))).))) | 0.965 -48.50 | |
| ppacificus | .........((.((((((....((....(( (((.((((.(((((((((((((.....)))) )).))))))))).)))))))....))..)))) )).)) | 0.992 -36.50 |
| cbriggsae | chromosome:chrX:3899335:3899427:1 | Opposite_strand|Intronic_non-coding|NM_076104|Y71H10A.2 ## Same_strand|Intronic_non-coding|NM_181850|Grm3 ## {Repeats: no} ## {MIR: cbr-mir-34} |
| cremanei | chromosome:chrUn:33757012:33757144:1 | Opposite_strand|Intronic_coding|NM_001107657 |
| celegans | chromosome:chrX:2969732:2969861:-1 | intergenic ## {MIR: cel-mir-34} |
| cbrenneri | chromosome:chrUn:541725:541857:1 | intergenic |
| cjaponica | chromosome:chrUn:18910363:18910479:1 | Opposite_strand|Intronic_coding|NM_010452 |
| ppacificus | chromosome:chrUn:130117543:130117640:1 | intergenic |
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