C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

block869_novel

block869_novel

Cloning frequencies
absolute	AF16
block869_novel 3arm	30
normalized	AF16
block869_novel 3arm	0.078

block869_novel relative cloning frequencies

block869 [novel_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.50/0.52	20/21/1.00	0.0	0.0	27	0	1	0	24	7	3arm	1	nd	0.19	2	30	1	na	na

Families
Member of family miR-34 (seed GGCAGUG): cbr-mir-34, block869_novel

block869 hairpin

		reads	miRBase family seed
seed	---------------------------------------------------------------------GGCAGU--G----------------------------------------------	30	miR-34
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------TGGCAGT--GTAAGTAGCTGGTG---------------------------------	21	27
	--------------------------------------------------------------------TGGCAGT--GTAAGTAGCTGGT----------------------------------	20	3
cbriggsae	TTCTTCGCCACGTGTCTCCAATGCTCTTCACCTCTATTTCCACT----TCCACCCAAGTAATTTGAAGTGGCAGT--GTAAGTAGCTGGTGAAGAA---------ATTGTTTTGAGACGAAGAG
ppacificus	-----TGTAGCAAGGATACGGTAGT-TGTATCTTTATCTTCACTGCTCTCTTCGCAGTCACTGTGAAGAGGCAGTGAGTGAGT------TGAAGAGACGGATGCCATTATCTCT----------
	* * * * * * * * * * * ** * ** * * *** ** * ** * * *
	------------------------------------------------- --------------------------- ------------------- ------------------------	NM_075282
	------------------------------------------------- --------------------------- ------------------- ------------------------	NM_182230
	------------------------------------------------- --------------------------- ------------------- ------------------------	NM_001104235
	------------------------------------------------- --------------------------- ------------------- ------------------------	NM_001104236
	------------------------------------------------- --------------------------- ------------------- ------------------------	NM_206458
cbriggsae	.(((((.......(((((((((..((((((((.((((((.(((( .((((.((((...))))..)))).))) ).))))))..)))))))). ))))....)))))))))).	1.000 -38.31
ppacificus	........(((((.((((.( (((.((((((((((((((((.((((((((((...)))))))))))))))))).)).. )))))).)))).))))..)))))..	0.994 -42.60

cbriggsae	chromosome:chrII:1879118:1879226:1	Opposite_strand\|Intronic_non-coding\|NM_075282\|wrs-1 ## Opposite_strand\|Intronic_coding\|NM_001104235\|CG17816 ## {Repeats: no}
ppacificus	chromosome:chrUn:152202579:152202680:-1	intergenic

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