cbr-mir-45
| absolute | AF16 |
| cbr-mir-45 5arm | 6 |
| cbr-mir-45 3arm | 126 |
| normalized | AF16 |
| cbr-mir-45 5arm | 0.016 |
| cbr-mir-45 3arm | 0.328 |
sblock15 (miRBase cbr-mir-45-1) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-45-1 | 0.001 | no | no | 0.41/0.48 | 19/22/0.96 | 0.0 0.0 | 0.0 0.0 | 4 166 | 0 0 | 1 1 | 0 0 | 9 7 | 10 9 | 5arm 3arm | 2 3 | nd nd | 0.10 0.10 | 2 1 | 193 | 1 | 1 | 2 |
| Member of family miR-44/45/61 (seed GACUAGA): cbr-mir-44, cbr-mir-45, cbr-mir-45, cbr-mir-61, block4958_cand |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------GACUAGA----------------------------------- | 188 | miR-44/45/61 |
| seed | -----------------------UGGAUGU----------------------------------------------------------------------------------- | 4 | novel |
| seed | ------------------------------------------------------------------------ACUAGAG---------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-44 | ----------------------------------------------------------------------TGACTAGAGACACATTCAGCT---------------------- | 21 | 166 |
| ----------------------------------------------------------------------TGACTAGAGACACATTCAGC----------------------- | 20 | 8 | |
| ----------------------------------------------------------------------TGACTAGAGACACATTCAG------------------------ | 19 | 8 | |
| ----------------------------------------------------------------------TGACTAGAGACACATTCAGCTT--------------------- | 22 | 6 | |
| ----------------------CTGGATGTGC--TCGTTAGTCAT-------------------------------------------------------------------- | 21 | 4 | |
| -----------------------------------------------------------------------GACTAGAGACACATTCAGCT---------------------- | 20 | 1 | |
| cbriggsae | ------------A-GTGCCACGCTGGATGTGC--TCGTTAGTCATAGTAACCT-CATCAATTCAGGCTTATGACTAGAGACACATTCAGCTTGGCGCC--------------- | ||
| cremanei | ACTGTACCAAAAC-GTGCCACGCTGGATGTGC--TCGTTAGTCATAATAACCT-CATTTAGTAAGGCTTATGACTAGAGACACATTCAGCTTGGCGCCGAACTATAA-ACAGT | ||
| celegans | -----ATGCACCATGTGCCACGCTGGATGTGC--TCGTTAGTCATAATATCCTCCACAAAGCAAGGACTATGACTAGAGACACATTCAGCTTGGCGCCGAATGCAT------- | ||
| cbrenneri | ACTGTTCGGGAAA-CTGCCACGCTGGATGTGC--TCGTTAGTCATAGTAGCCT--ATCCTGAACGGCCTATGACTAGAGACACATTCAGCTTGGCTCCGATATCAATTACAGT | ||
| cjaponica | -----CTGAAATC-TTGCCACGCTGAATGTGC--TCGTTAGTCATAACCACCCATATCGTCAAGGGCATATGACTAGAGACACATTCAGCTTGGCTCACATTTTCAG------ | ||
| ppacificus | -----GAGTCGCA-GCCCCGCTCTGGATGTGTGATC-TTGGTCGTATCCGCGCAAATGCTCAATGA-TTATGACTAGAGACACATTCAGCTTGGGGCCGGCTC---------- | ||
| ** * *** ***** ** ** *** ** * * * ************************** * | |||
| +++++ + ++++++++++++++++++ +++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001047975 | ||
| +++++ + ++++++++++++++++++ +++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_214509 | ||
| +++++ + ++++++++++++++++++ +++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001034039 | ||
| +++++ + ++++++++++++++++++ +++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001033832 | ||
| +++++ + ++++++++++++++++++ +++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_214466 | ||
| +++++ + ++++++++++++++++++ +++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_080679 | ||
| +++++ + ++++++++++++++++++ +++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_080681 | ||
| +++++ + ++++++++++++++++++ +++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_080680 | ||
| ----- - ------------------ ------------------- -------------------------------------------- ----- | NM_133464 | ||
| cbriggsae | . ((((((.((((((((((( ((..(((((((((...((( .(.....).))).)))))))))))).)))))))))).)))))). | 1.000 -40.20 | |
| cremanei | (((((........ ((((((.((((((((((( ((..(((((((((...((( .........))).)))))))))))).)))))))))).)))))).......... ))))) | 0.994 -42.77 | |
| celegans | (((((....((((((.((((((((((( ((..((((((((...((((..........)))).))))))))))).)))))))))).))))))....))))) | 1.000 -45.40 | |
| cbrenneri | ((((((((((... ..((((.((((((((((( ((..(((((((((..(((. .........))))))))))))))).)))))))))).)))))))))........))))) | 0.902 -47.30 | |
| cjaponica | ((((((.. ..((((.((((((((((( ((..((((((((....(((..........)))..))))))))))).)))))))))).))))......)))))) | 1.000 -42.90 | |
| ppacificus | ((((((.. ((((((..((((((((((..(( .((((((((..((.((....))....)). .)))))))))).))))))))))..)))))))))))) | 0.999 -44.40 |
| cbriggsae | chromosome:chrII:8058565:8058646:-1 | Same_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Intronic_non-coding|NM_133464|ZNF483 ## {Repeats: no} ## {MIR: cbr-mir-45-1} |
| cremanei | chromosome:chrUn:8356876:8356983:-1 | intergenic |
| celegans | chromosome:chrII:11880860:11880958:-1 | intergenic ## {Repeats: AT_rich 1 28 -1 class=Low_complexity} ## {MIR: cel-mir-45} |
| cbrenneri | chromosome:chrUn:101670635:101670742:-1 | Same_strand|Intronic_coding|NM_007742 ## Opposite_strand|Intronic_coding|NM_138591 |
| cjaponica | chromosome:chrUn:98930666:98930764:1 | intergenic |
| ppacificus | chromosome:chrUn:21366498:21366592:-1 | Opposite_strand|Intronic_coding|NM_001032504 ## Same_strand|Intronic_coding|NM_066966 ## {Repeats: G-rich 6 78 -1 class=Low_complexity} |
sblock24 (miRBase cbr-mir-45-2) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-45-2 | 0.001 | no | no | 0.41/0.45 | 19/22/0.96 | 0.0 0.0 | 0.0 0.0 | 4 166 | 0 0 | 1 1 | 0 0 | 9 7 | 10 9 | 5arm 3arm | 1 3 | nd nd | 0.10 0.10 | 2 1 | 193 | 1 | 1 | 2 |
| Member of family miR-44/45/61 (seed GACUAGA): cbr-mir-44, cbr-mir-45, cbr-mir-45, cbr-mir-61, block4958_cand |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------GACUAGA----------------------------------- | 188 | miR-44/45/61 |
| seed | ----------------------UGGAUGU----------------------------------------------------------------------------------- | 4 | novel |
| seed | -----------------------------------------------------------------------ACUAGAG---------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-44 | ---------------------------------------------------------------------TGACTAGAGACACATTCAGCT---------------------- | 21 | 166 |
| ---------------------------------------------------------------------TGACTAGAGACACATTCAGC----------------------- | 20 | 8 | |
| ---------------------------------------------------------------------TGACTAGAGACACATTCAG------------------------ | 19 | 8 | |
| ---------------------------------------------------------------------TGACTAGAGACACATTCAGCTT--------------------- | 22 | 6 | |
| ---------------------CTGGATGTGT--TCGTTAGTCAT-------------------------------------------------------------------- | 21 | 4 | |
| ----------------------------------------------------------------------GACTAGAGACACATTCAGCT---------------------- | 20 | 1 | |
| cbriggsae | ------------AGTGCCACGCTGGATGTGT--TCGTTAGTCATAGTAACCT-CATCAATTCAGGCTTATGACTAGAGACACATTCAGCTTGGCGCC--------------- | ||
| cremanei | ACTGTACCAAAACGTGCCACGCTGGATGTGC--TCGTTAGTCATAATAACCT-CATTTAGTAAGGCTTATGACTAGAGACACATTCAGCTTGGCGCCGAACTATAA-ACAGT | ||
| celegans | ----ATGCACCATGTGCCACGCTGGATGTGC--TCGTTAGTCATAATATCCTCCACAAAGCAAGGACTATGACTAGAGACACATTCAGCTTGGCGCCGAATGCAT------- | ||
| cbrenneri | ACTGTTCGGGAAACTGCCACGCTGGATGTGC--TCGTTAGTCATAGTAGCCT--ATCCTGAACGGCCTATGACTAGAGACACATTCAGCTTGGCTCCGATATCAATTACAGT | ||
| cjaponica | -----CTGAAATCTTGCCACGCTGAATGTGC--TCGTTAGTCATAACCACCCATATCGTCAAGGGCATATGACTAGAGACACATTCAGCTTGGCTCACATTTTCAG------ | ||
| ppacificus | -----GAGTCGCAGCCCCGCTCTGGATGTGTGATC-TTGGTCGTATCCGCGCAAAT-GCTCAATGATTATGACTAGAGACACATTCAGCTTGGGGCCGGCTC---------- | ||
| ** * *** ***** ** ** *** ** * * * ************************** * | |||
| ----- ------------------- ------------------- -------------------------------------------- ----- | NM_001047975 | ||
| ----- ------------------- ------------------- -------------------------------------------- ----- | NM_214509 | ||
| ----- ------------------- ------------------- -------------------------------------------- ----- | NM_001034039 | ||
| ----- ------------------- ------------------- -------------------------------------------- ----- | NM_001033832 | ||
| ----- ------------------- ------------------- -------------------------------------------- ----- | NM_214466 | ||
| ----- ------------------- ------------------- -------------------------------------------- ----- | NM_080679 | ||
| ----- ------------------- ------------------- -------------------------------------------- ----- | NM_080681 | ||
| ----- ------------------- ------------------- -------------------------------------------- ----- | NM_080680 | ||
| +++++ +++++++++++++++++++ +++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_133464 | ||
| cbriggsae | .((((((.((((((((((( (..((((((((((...((( .(.....).))).)))))))))).)))))))))))).)))))). | 1.000 -40.40 | |
| cremanei | (((((........((((((.((((((((((( ((..(((((((((...((( .........))).)))))))))))).)))))))))).)))))).......... ))))) | 0.994 -42.77 | |
| celegans | (((((....((((((.((((((((((( ((..((((((((...((((..........)))).))))))))))).)))))))))).))))))....))))) | 1.000 -45.40 | |
| cbrenneri | ((((((((((.....((((.((((((((((( ((..(((((((((..(((. .........))))))))))))))).)))))))))).)))))))))........))))) | 0.902 -47.30 | |
| cjaponica | ((((((....((((.((((((((((( ((..((((((((....(((..........)))..))))))))))).)))))))))).))))......)))))) | 1.000 -42.90 | |
| ppacificus | ((((((..((((((..((((((((((..(( .((((((((..((.((.... ))....))..)))))))))).))))))))))..)))))))))))) | 0.999 -44.40 |
| cbriggsae | chromosome:chrII:8061358:8061439:1 | Opposite_strand|Intronic_coding|NM_001047975|LOC683871 ## Same_strand|Intronic_non-coding|NM_133464|ZNF483 ## {Repeats: no} ## {MIR: cbr-mir-45-2} |
| cremanei | chromosome:chrUn:8356876:8356983:-1 | intergenic |
| celegans | chromosome:chrII:11880860:11880958:-1 | intergenic ## {Repeats: AT_rich 1 28 -1 class=Low_complexity} ## {MIR: cel-mir-45} |
| cbrenneri | chromosome:chrUn:101670635:101670742:-1 | Same_strand|Intronic_coding|NM_007742 ## Opposite_strand|Intronic_coding|NM_138591 |
| cjaponica | chromosome:chrUn:98930666:98930764:1 | intergenic |
| ppacificus | chromosome:chrUn:21366498:21366592:-1 | Opposite_strand|Intronic_coding|NM_001032504 ## Same_strand|Intronic_coding|NM_066966 ## {Repeats: G-rich 6 78 -1 class=Low_complexity} |
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