cbr-mir-61
| absolute | AF16 |
| cbr-mir-61 5arm | 1 |
| cbr-mir-61 3arm | 81 |
| normalized | AF16 |
| cbr-mir-61 5arm | 0.003 |
| cbr-mir-61 3arm | 0.211 |
sblock59 (miRBase cbr-mir-61) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-61 | 0.001 | no | no | 0.41/0.48 | 19/23/0.99 | 0.0 0.0 | 0.0 0.0 | 1 74 | 0 0 | 1 1 | 0 0 | 14 13 | 3 6 | 5arm 3arm | 1 1 | nd nd | 0.23 0.19 | 4 3 | 82 | 1 | 2 | 2 |
| Located in cluster 8: cbr-mir-250, cbr-mir-61 |
| Member of family miR-44/45/61 (seed GACUAGA): cbr-mir-44, cbr-mir-45, cbr-mir-45, cbr-mir-61, block4958_cand |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------GACUAGA--------------------------------------- | 81 | miR-44/45/61 |
| seed | ----------------------------------------GAGU-UAA-------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------------------------------------------TGACTAGAACCTTGACTCTGC-------------------------- | 21 | 74 | |
| ---------------------------------------------------------------------------------TGACTAGAACCTTGACTCTG--------------------------- | 20 | 6 | |
| ---------------------------------------CGAGT-TAAGGCTAATAGTCCTT------------------------------------------------------------------ | 22 | 1 | |
| ---------------------------------------------------------------------------------TGACTAGAACCTTGACTCT---------------------------- | 19 | 1 | |
| cbr-miR-61 | ---------------------------------------------------------------------------------TGACTAGAACCTTGACTCTGCTC------------------------ | 23 | - |
| cbriggsae | --------TCGGTG-----------------TCTCGAGCCGAGT-TAAGGCTAATAGTCCTTCCGGTGT-----ATGGTAATGACTAGAACCTTGACTCTGCTCGAGTTACTGAG------------- | ||
| cremanei | GCGTAATATCGGTC-----------------TTCCGAGTTGGGT-CACGGCGCTTAGTCCTTCCGACAT-----ATGGCAATGACTAGAACCTTGGCTCAGCTCGGGACTCCGATGAGC--------- | ||
| celegans | -----------ATC-----------GCTGAACCTCGAGATGGGT-TACGGGGCTTAGTCCTTCCTCCGT-----ATGGCAATGACTAGAACCGTTACTCATCTCGAGGTTTCGGTGAT---------- | ||
| cbrenneri | --------CCAGTCTCGTAAAACATGTTGAACTTCGAGTTGGGT-CACGGTGCTTAGTCCTTCCAACAG-----TCGGTAATGACTAGAACCGTGACTCAGCTCGAGGAAGCGGCAGTTTTTCACTGG | ||
| cjaponica | -----------GTC----AAATTTACGCGATTCGCGAGTTGGGCGCACGGCGTTTAGTCCTTTCAACACGTGAAATGGTAATGACTAGAACCGTCGCTCATCCCGCGTCTATGCGGCTATTTGTC--- | ||
| * **** * * * ** ******** * ** ************* * *** * ** * * | |||
| ----- ------ ------------- ------------------------ ----------------------------------------- ----- | NM_007734 | ||
| ----- ------ ------------- ------------------------ ----------------------------------------- ----- | NM_001122952 | ||
| ----- ------ ------------- ------------------------ ----------------------------------------- ----- | NM_001122953 | ||
| ----- ------ ------------- ------------------------ ----------------------------------------- ----- | NM_059770 | ||
| ----- ------ ------------- ------------------------ ----------------------------------------- ----- | NM_059769 | ||
| ----- ------ ------------- ------------------------ ----------------------------------------- ----- | NM_010905 | ||
| ----- ------ ------------- ------------------------ ----------------------------------------- ----- | NM_000092 | ||
| ----- ------ ------------- ------------------------ ----------------------------------------- ----- | NM_078262 | ||
| ----- ------ ------------- ------------------------ ----------------------------------------- ----- | NM_001029071 | ||
| ----- ------ ------------- ------------------------ ----------------------------------------- ----- | NM_001029072 | ||
| +++++ ++++++ +++++++++++++ ++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ +++++ | NM_000945 | ||
| ----- ------ ------------- ------------------------ ----------------------------------------- ----- | NM_079093 | ||
| +++++ ++++++ +++++++++++++ ++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001089577 | ||
| ----- ------ ------------- ------------------------ ----------------------------------------- ----- | NM_117764 | ||
| +++++ ++++++ +++++++++++++ ++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ +++++ | NM_153093 | ||
| ----- ------ ------------- ------------------------ ----------------------------------------- ----- | NM_001085355 | ||
| cbriggsae | (((((( .(((((((.(((( (((((....(((((.(((((.... .))).)).)))))...))))))))).))))))).)))))). | 1.000 -42.10 | |
| cremanei | ......((((((.. ((((((((((((( ((.((..((.((((.(((((.... .))).)).))))))..)).)))))))))))))))..))))))... | 1.000 -43.80 | |
| celegans | ((( ((((((((((((((((((( .((((..((.((((.((((..... ..)).)).))))))..)))).))))))))))))))).))))))) | 1.000 -50.30 | |
| cbrenneri | (((((.....(((((.(((((..((((((((((((( ((((((..((((((.((((..... ..)).)).)))))).)))))))))))))))))))...))))))))))..))))) | 1.000 -55.20 | |
| cjaponica | ..( ((((...((((...((((...((((((.((((..(((((((((((((.....))))).)).....)))))).))))))))))...))))....))))...))))).. | 0.994 -36.70 |
| cbriggsae | chromosome:chrV:6755274:6755357:-1 | Opposite_strand|Intronic_coding|NM_007734|Col4a3 ## Opposite_strand|Intronic_non-coding|NM_001122952|Nfia ## Same_strand|Intronic_non-coding|NM_000945|PPP3R1 ## Same_strand|Intronic_coding|NM_001089577|zgc:162132 ## {Repeats: no} ## {MIR: cbr-mir-61} |
| cremanei | chromosome:chrUn:126693023:126693118:-1 | Opposite_strand|Intronic_coding|NM_073652 ## Same_strand|Intronic_coding|NM_067460 |
| celegans | chromosome:chrV:11770038:11770127:-1 | intergenic ## {MIR: cel-mir-61} |
| cbrenneri | chromosome:chrUn:182159919:182160032:1 | intergenic |
| cjaponica | chromosome:chrUn:133811034:133811143:-1 | intergenic |
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