cbr-mir-44
| absolute | AF16 |
| cbr-mir-44 5arm | 2 |
| cbr-mir-44 3arm | 63 |
| normalized | AF16 |
| cbr-mir-44 5arm | 0.005 |
| cbr-mir-44 3arm | 0.164 |
sblock13 (miRBase cbr-mir-44) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-44 | 0.001 | no | no | 0.41/0.48 | 19/22/0.96 | 0.0 0.0 | 0.0 0.0 | 4 166 | 0 0 | 1 1 | 0 0 | 13 14 | 10 12 | 5arm 3arm | 2 3 | nd nd | 0.10 0.10 | 2 1 | 193 | 1 | 1 | 2 |
| Located in cluster 2: cbr-mir-44, cbr-mir-43, cbr-mir-42 |
| Member of family miR-44/45/61 (seed GACUAGA): cbr-mir-44, cbr-mir-45, cbr-mir-45, cbr-mir-61, block4958_cand |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------GACUAGA---------------------------------------- | 188 | miR-44/45/61 |
| seed | ----------------------------UGGAUGU-------------------------------------------------------------------------------------------- | 4 | novel |
| seed | ---------------------------------------------------------------------------------ACUAGAG--------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-44 | -------------------------------------------------------------------------------TGACTAGAGACACATTCAGCT--------------------------- | 21 | 166 |
| -------------------------------------------------------------------------------TGACTAGAGACACATTCAG----------------------------- | 19 | 8 | |
| -------------------------------------------------------------------------------TGACTAGAGACACATTCAGC---------------------------- | 20 | 8 | |
| -------------------------------------------------------------------------------TGACTAGAGACACATTCAGCTT-------------------------- | 22 | 6 | |
| ---------------------------CTGGATGTGCTCGTTAGTCAT------------------------------------------------------------------------------- | 21 | 4 | |
| --------------------------------------------------------------------------------GACTAGAGACACATTCAGCT--------------------------- | 20 | 1 | |
| cbriggsae | --------------GAGAAGGGCCGATCTGGATGTGCTCGTTAGTCATAGACGAATCACACTTGAAAGGTCA-----TATGACTAGAGACACATTCAGCTTGGCCTGGATCTCA------------- | ||
| cremanei | GAGTTAGAGAGTGAGAGAATGGCCGATCTGGATGTGCTCGTTAGTCATAGACGAATCACAGA-AAACAGTCA-----TATGACTAGAGACACATTCAGCTTGGCCTGGATCTCAAATTGAAGAATTT | ||
| celegans | -------------------------ATCTGGATGTGCTCGTTGGTCATAGACGTCAA-CACG-AACTGTTCA-----TATGACTAGAGACACATTCAGCT--------------------------- | ||
| cbrenneri | ------------GAGAGAATGGCCGATCTGGATGTGCTCGTTAGTCATAGACGATACACAGA-GAACGGTCA-----TATGACTAGAGACACATTCAGCTTGGCCTGGATCTC-------------- | ||
| cjaponica | -------------------------ATCTGGGTGTGCTCGTTAGTCATA---------TATCCGCACGGCTA-TGAGTATGACTAGAGACACATTCAGCT--------------------------- | ||
| ppacificus | -----------GAGTCGCAGCCCCGCTCTGGATGTG-----TGATCTTGGTCGTATC-CGCGCAAATGCTCAATGATTATGACTAGAGACACATTCAGCTTGGGGCCGGCTC--------------- | ||
| ***** **** * ** * * *********************** | |||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ +++++ | NM_001047975 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ +++++ | NM_214509 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ +++++ | NM_001034039 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ +++++ | NM_001033832 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ +++++ | NM_214466 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ +++++ | NM_080679 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ +++++ | NM_080681 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ +++++ | NM_080680 | ||
| ----- ---------------------------------------------------------- ------------------------------------- ----- | NM_133464 | ||
| cbriggsae | ((((.(((((((.((((((((((((..(((((((((((...(((....)))...))). ))))))))))).))))))))).)))))))...)))). | 1.000 -46.40 | |
| cremanei | (((((.((...(((((....((((((.((((((((((((..(((((((((((.......... .....))). ))))))))))).))))))))).))))))....)))))..))....))))) | 0.996 -46.36 | |
| celegans | ..((((((((((((...((((((((((.((.. ...) )...))).. ))))))).))).))))))))).. | 1.000 -23.70 | |
| cbrenneri | ((((....((((((.((((((((((((..(((((((((((.......... .....))). ))))))))))).))))))))).))))))....)))) | 1.000 -42.66 | |
| cjaponica | ..((((((((((((..(((((((( (..((....))... ...)))))))))))).))))))))).. | 1.000 -23.90 | |
| ppacificus | ((((((..((((((..((((((((( (..((.((((((((.. ((.((....))....))..)))))))))).))))))))))..)))))))))))) | 0.999 -44.40 |
| cbriggsae | chromosome:chrII:8049267:8049361:-1 | Same_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Intronic_non-coding|NM_133464|ZNF483 ## {Repeats: no} ## {MIR: cbr-mir-44} |
| cremanei | chromosome:chrUn:8362354:8362474:1 | intergenic |
| celegans | chromosome:chrII:11889919:11890053:1 | intergenic ## {MIR: cel-mir-44} |
| cbrenneri | chromosome:chrUn:172696460:172696554:1 | intergenic |
| cjaponica | chromosome:chrUn:98918996:98919130:-1 | intergenic |
| ppacificus | chromosome:chrUn:21366498:21366592:-1 | Opposite_strand|Intronic_coding|NM_001032504 ## Same_strand|Intronic_coding|NM_066966 ## {Repeats: G-rich 6 78 -1 class=Low_complexity} |
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