cbr-mir-42
| absolute | AF16 |
| cbr-mir-42 5arm | 13 |
| cbr-mir-42 3arm | 311 |
| normalized | AF16 |
| cbr-mir-42 5arm | 0.034 |
| cbr-mir-42 3arm | 0.811 |
sblock14 (miRBase cbr-mir-42) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-42 | 0.001 | no | no | 0.44/0.59 | 18/26/0.94 | 0.0 0.0 | 0.0 0.0 | 11 291 | 0 0 | 1 1 | 0 0 | 18 15 | 3 2 | 5arm 3arm | 1 1 | nd nd | 0.22 0.05 | 4 1 | 324 | 1 | -1 | 1 |
| Located in cluster 2: cbr-mir-44, cbr-mir-43, cbr-mir-42 |
| Member of family miR-42 (seed ACCGGGU): cbr-mir-42, block5113_cand |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------CACCGGG-------------------------------------- | 310 | miR-35/36/38/39/40/41 |
| seed | ----------------------------GUGGGUG------------------------------------------------------------------------------------------- | 12 | novel |
| seed | -----------------------------UGGGUGU------------------------------------------------------------------------------------------ | 1 | novel |
| seed | --------------------------------------------------------------------------------UCACCGG--------------------------------------- | 1 | novel |
| seed | ----------------------------------------------------------------------------------ACCGGGU------------------------------------- | 0 | miR-42 |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------------------------------------------------------TCACCGGGTTAACATCTACAG------------------------- | 21 | 291 | |
| --------------------------------------------------------------------------------TCACCGGGTTAACATCTAC--------------------------- | 19 | 17 | |
| ---------------------------TGTGGGTGTTCGCCTTTTCGG--TG-------------------------------------------------------------------------- | 23 | 11 | |
| --------------------------------------------------------------------------------TCACCGGGTTAACATCTACA-------------------------- | 20 | 1 | |
| ----------------------------GTGGGTGTTCGCCTTTTCGG--TG-------------------------------------------------------------------------- | 22 | 1 | |
| ---------------------------TGTGGGTGTTCGCCTTTTCGG--TGAAG----------------------------------------------------------------------- | 26 | 1 | |
| -------------------------------------------------------------------------------TTCACCGGGTTAACATCT----------------------------- | 18 | 1 | |
| --------------------------------------------------------------------------------TCACCGGGTTAACATCTA---------------------------- | 18 | 1 | |
| cbr-miR-42 | ---------------------------------------------------------------------------------CACCGGGTTAACATCTACAG------------------------- | 20 | - |
| cbriggsae | ---------TAACCCTTGTCGGACCTTTGTGGGTGTTCGCCTTTTCGG--TGAAGT----------TACTGAATGCTTCTTCACCGGGTTAACATCTACAGAGGTCCTAAAGGGTT---------- | ||
| cremanei | ---------AAACCCTTGTCGGACCTTTGTGGATGTTTCCTTTTTCGG--TGAAGTT---GTTCCGTTGAATTATCTTCTTCACCGGGTTAACATCTACAGAGGTCCTCGAGGGTTT--------- | ||
| celegans | ------------CCCTTCGCGGACCTTTGTGGGTGTTTGCTTTTTCGG--TGAAGTT----GTCTTCCGTAGCTTCTTCTTCACCGGGTTAACATCTACAGAGGTCCAAAAAGGG----------- | ||
| cbrenneri | --------------------------TTGTGGATGTTTGCCTTTTCGG--TGAAGTT---------TCAAAAGATATTCTTCACCGGGTTAACATCTACAG------------------------- | ||
| cjaponica | TCTCGTCTTGAGACGCCGTTGGACCTCCGTGGATGTTTGCTTTTGCGG--TGAAGAG--------GTGATAACGGGCGCTTCACCGGGTTAACATCTACAGAGGTCCGGGCGTCTTCGTGGCGGGA | ||
| ppacificus | ---CATAGTGCATTCAGTGCAGCCCGCAGTGGGTGTCTGCCT---CGGTCTGAAGTGTGAGATGCATGATCCTCCGTTCTTCACCGGGTGAACATCCATTGCGGGCGCATGCACCCTG-------- | ||
| **** *** * * *** ***** *********** ****** * * | |||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001047975 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_214509 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001034039 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001033832 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_214466 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_080679 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_080681 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_080680 | ||
| ----- --------------------------------------- ------ -------------------------------------------------- ----- | NM_133464 | ||
| cbriggsae | .(((((((...(((((((((((((((((.(((....((( (((((. ............))))))))))).)))))))))))))))))..))))))) | 1.000 -51.82 | |
| cremanei | (((((((((..(((((((((((((((((..((....((( (((((.. ((((....))))......))))))))))..))))))))))))))))).))))))))) | 1.000 -54.20 | |
| celegans | (((((...(((((((((((((((((.(((....((( (((((.. ((........)).....))))))))))).)))))))))))))))))...))))) | 1.000 -46.60 | |
| cbrenneri | .((((((((((.(((....((( (((((.. ((....))....))))))))))).)))))))))). | 1.000 -28.50 | |
| cjaponica | (((((((..((((((((..((((((((.(((((((((.(((....((( (((((.. ((........)).))))))))))).))))))))).))))))))))))))))...))))))) | 1.000 -64.70 | |
| ppacificus | ....(((((.....(((.(((((((((((((((..(((. ((((..((((...(((..........)))....)))))))))))..))))))))))))))))))))))).... | 0.999 -54.40 |
| cbriggsae | chromosome:chrII:8049572:8049666:-1 | Same_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Intronic_non-coding|NM_133464|ZNF483 ## {Repeats: no} ## {MIR: cbr-mir-42} |
| cremanei | chromosome:chrUn:8362075:8362177:1 | intergenic |
| celegans | chromosome:chrII:11889724:11889820:1 | intergenic ## {MIR: cel-mir-42} |
| cbrenneri | chromosome:chrUn:172696155:172696289:1 | intergenic |
| cjaponica | chromosome:chrUn:98919245:98919360:-1 | intergenic |
| ppacificus | chromosome:chrUn:21366661:21366772:-1 | Opposite_strand|Intronic_coding|NM_001032504 ## Same_strand|Intronic_coding|NM_066966 ## {Repeats: G-rich 6 78 -1 class=Low_complexity} |
©2008 InteRNA Genomics B.V.