C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

block4958_cand

block4958_cand

Cloning frequencies
absolute	AF16
block4958_cand 3arm	1
normalized	AF16
block4958_cand 3arm	0.003

block4958_cand relative cloning frequencies

block4958 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	14	8	3arm	1	nd	0.19	1	1	1	na	na

Families
Member of family miR-44/45/61 (seed GACUAGA): cbr-mir-44, cbr-mir-45, cbr-mir-45, cbr-mir-61, block4958_cand

block4958 hairpin

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------GACUAGA------------------------------------------------	1	miR-44/45/61
		len	cloning frequencies
			AF16
	-------------------------------------------------------T---------------------------GACTAGAGTGCTGAGCTCTC-----------------------------------	21	1
cbriggsae	-CCTCCCTCCGAGTAGAGTTCAGACCCTGGTGACCTACAGCAGT--AGCATGAGGT---------------------------GACTAGAGTGCTGAGCTCTC-------------CTTGGTTCAGAGGC--------
cremanei	---AATTTTAAAATCAGATTCAGAATCCTCACGCCTTCAGCTTT----CTAGAAATTCTAATTATTATAAAAATTACAT----GACTAGAAAGCTGAAGACACATGGATTCTGAATCCGGTTTCAAAATT--------
celegans	TCAACCCTTCGAAGTGA--TCA----------ACCAACAGAGAAGAAGCTTCAAATGGCTGCTCTAGCAGAAGCTGCAGCAAAGACTAGAAGACTTCGTCCAT-----CTCGTGATCCAGCTTTAGAATCTCAGTTGG
	* * * *** * * * ***** * * * ** * *
cbriggsae	((((...(((((.(((((((((((.(((((.((((.((((... .)).)))))) .))))).)).))))))))). )))))....)))).	1.000 -43.70
cremanei	((((((.(((((.((((((((((((......(((((((((( ((((..((..(((((........))))).)) ..))))))))))))))......)))))))))))).))))).))))))	0.999 -46.40
celegans	.((((..(((((((((( ((( .......((((.((((((((.....(((((...(((....))))))))........)))).)))).....) ))).)))))..))))).))).....)))).	0.840 -30.02

cbriggsae	chromosome:chrX:9929423:9929509:1	{Repeats: no}
cremanei	chromosome:chrUn:76148535:76148653:1	Same_strand\|Intronic_coding\|NM_071262 ## {SimpF: trf,trf}
celegans	chromosome:chrIII:10727544:10727664:-1	Same_strand\|Exonic_coding\|W09D10.2

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