cbr-mir-250
| absolute | AF16 |
| cbr-mir-250 5arm | 8 |
| cbr-mir-250 3arm | 205 |
| normalized | AF16 |
| cbr-mir-250 5arm | 0.021 |
| cbr-mir-250 3arm | 0.534 |
sblock58 (miRBase cbr-mir-250) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-250 | 0.001 | no | no | 0.42/0.59 | 19/22/0.90 | 0.0 0.0 | 0.0 0.0 | 7 165 | 0 0 | 1 1 | 0 0 | 13 14 | 3 6 | 5arm 3arm | 1 1 | nd nd | 0.23 0.20 | 2 2 | 213 | 1 | 2 | 1 |
| Located in cluster 8: cbr-mir-250, cbr-mir-61 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------AUCACAG------------------------------------------- | 205 | miR-43 |
| seed | --------------------------------CUUCAGU------------------------------------------------------------------------------------- | 8 | novel |
| seed | ----------------------------------------------------------------------------CACAGUC----------------------------------------- | 0 | miR-250 |
| len | cloning frequencies | ||
| AF16 | |||
| -------------------------------------------------------------------------AATCACAGTCAACTGTTGGC------------------------------- | 20 | 165 | |
| -------------------------------------------------------------------------AATCACAGTCAACTGTTGG-------------------------------- | 19 | 22 | |
| -------------------------------------------------------------------------AATCACAGTCAACTGTTGGCA------------------------------ | 21 | 18 | |
| -------------------------------CCTTCAGTTGCCTCGTGATCCG----------------------------------------------------------------------- | 22 | 7 | |
| -------------------------------CCTTCAGTTGCCTCGTGATCC------------------------------------------------------------------------ | 21 | 1 | |
| cbr-miR-250 | ---------------------------------------------------------------------------TCACAGTCAACTGTTGGCACGG--------------------------- | 22 | - |
| cbriggsae | ----------------TCTTCG--GACCACGCCTTCAGTTGCCTCGTGATCCGCCGAATCTG--TAATGGACGAATCACAGTCAACTGTTGGCACGGTCCTTGAA-------GT---------- | ||
| cremanei | TGCTGTTATTCGAAGGTCTTCG--GACCGCCCCTTCAGTTGACTCGTGATCCGCCGACTTTGATATATGGACGAATCACAGTCACCTGATGGTACGGTCTTTGAATTCCTATATTATTATGGTA | ||
| celegans | ------------------------------GCCTTCAGTTGCCTCGTGATCCGCCAAACACAATAAATGGACGAATCACAGTCAACTGTTGGC------------------------------- | ||
| cbrenneri | ------------------------------GCCGGCAGTTGCCTGTTGATCCGCCGCAATTA--TGATGGACGAATCACAGTCAACTGTTGGC------------------------------- | ||
| cjaponica | --------TTTATTGGTCTTCATTGACCATTCCTTCAGTTTTCTCGTGATCCGCCAATCTT---CCATGGACGAATCACAGTCAACTGTTGGCCTGGTCCATGTC-------GAGACGATTGGA | ||
| ** ***** ** ********* ****************** *** *** | |||
| ----- ------ -------------------------------------- ----------------------------------------- -- ----- | NM_007734 | ||
| ----- ------ -------------------------------------- ----------------------------------------- -- ----- | NM_001122952 | ||
| ----- ------ -------------------------------------- ----------------------------------------- -- ----- | NM_001122953 | ||
| ----- ------ -------------------------------------- ----------------------------------------- -- ----- | NM_059770 | ||
| ----- ------ -------------------------------------- ----------------------------------------- -- ----- | NM_059769 | ||
| ----- ------ -------------------------------------- ----------------------------------------- -- ----- | NM_010905 | ||
| ----- ------ -------------------------------------- ----------------------------------------- -- ----- | NM_000092 | ||
| ----- ------ -------------------------------------- ----------------------------------------- -- ----- | NM_078262 | ||
| ----- ------ -------------------------------------- ----------------------------------------- -- ----- | NM_001029071 | ||
| ----- ------ -------------------------------------- ----------------------------------------- -- ----- | NM_001029072 | ||
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ ++ +++++ | NM_000945 | ||
| ----- ------ -------------------------------------- ----------------------------------------- -- ----- | NM_079093 | ||
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ ++ +++++ | NM_001089577 | ||
| ----- ------ -------------------------------------- ----------------------------------------- -- ----- | NM_117764 | ||
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ ++ +++++ | NM_153093 | ||
| ----- ------ -------------------------------------- ----------------------------------------- -- ----- | NM_001085355 | ||
| cbriggsae | .((((( ((((..(((..((((((.((.(((((.(((((...... ...))).)).))))))).))))))..)))..)))))..))) ). | 1.000 -34.80 | |
| cremanei | ((((((.......(((..(((( (((((..((.((((.(((((.(((((.(((((...........))).)).)))))))))).)))).))..))))))..)))..)))........)))))) | 0.984 -40.46 | |
| celegans | (((..((((((.((.(((((.(((((...........))).)).))))))).))))))..))) | 1.000 -23.30 | |
| cbrenneri | (((((((((((.(((.((((.(((((((.... )).))).)).))))))).))))))))))) | 1.000 -29.40 | |
| cjaponica | .......((((((((.(((((..((..(((((..((.(((((.(((((..... ...))).)).)))))))..)))))..))..))))).))).. )))))....... | 0.985 -35.00 |
| cbriggsae | chromosome:chrV:6755121:6755207:-1 | Opposite_strand|Intronic_coding|NM_007734|Col4a3 ## Opposite_strand|Intronic_non-coding|NM_001122952|Nfia ## Same_strand|Intronic_non-coding|NM_000945|PPP3R1 ## Same_strand|Intronic_coding|NM_001089577|zgc:162132 ## {Repeats: no} ## {MIR: cbr-mir-250} |
| cremanei | chromosome:chrUn:126692870:126692991:-1 | Opposite_strand|Intronic_coding|NM_073652 ## Same_strand|Intronic_coding|NM_067460 |
| celegans | chromosome:chrV:11769881:11770007:-1 | intergenic ## {MIR: cel-mir-250} |
| cbrenneri | chromosome:chrUn:84265177:84265303:1 | intergenic |
| cjaponica | chromosome:chrUn:133810902:133811007:-1 | intergenic |
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