C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

block2886_novel

block2886_novel

Cloning frequencies
absolute	AF16
block2886_novel 5arm	509
normalized	AF16
block2886_novel 5arm	1.327

block2886_novel relative cloning frequencies

block2886 [novel_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.33/0.38	19/27/0.93	0.0	0.0	459	0	1	0	19	21	5arm	1	nd	0.14	1	509	1	na	na

Families
Member of family miR-239a (seed UUGUACU): cel-mir-238, cbr-mir-239a, block2886_novel

block2886 hairpin

		reads	miRBase family seed
seed	--------------------UUGUACU---------------------------------------------------------------------------------------	503	miR-239a
seed	------------------------ACUCAUG-----------------------------------------------------------------------------------	6	novel
		len	cloning frequencies
			AF16
	-------------------TTTGTACTCATGTAAGGTGAC--------------------------------------------------------------------------	21	459
	-------------------TTTGTACTCATGTAAGGTGACAAAG----------------------------------------------------------------------	25	27
	-------------------TTTGTACTCATGTAAGGTGA---------------------------------------------------------------------------	20	6
	-----------------------TACTCATGTAAGGTGACAAA-----------------------------------------------------------------------	20	6
	-------------------TTTGTACTCATGTAAGGTGACAAAGAT--------------------------------------------------------------------	27	6
	-------------------TTTGTACTCATGTAAGGTG----------------------------------------------------------------------------	19	3
	-------------------TTTGTACTCATGTAAGGTGACA-------------------------------------------------------------------------	22	1
	-------------------TTTGTACTCATGTAAGGTGACAAA-----------------------------------------------------------------------	24	1
cbriggsae	tccaatattttcggcaattTTTGTACTCATGTAAGGTGACaaagatagcaaatttgaccgtatccacgtcaattatcatgcatcttcatcagtgcaagaatggccttttttgga
	******************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------	NM_001028060
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067672
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
cbriggsae	(((((.......(((.(((((((((((.(((.((((((.((..(((((.....((((.(((....)))))))))))).))))))))))).))))))))))).)))....)))))	1.000 -34.50

cbriggsae

chromosome:chrIV_random:64223:64336:1

Opposite_strand|Intronic_coding|NM_001028060|F56B3.4 ## Same_strand|Intronic_non-coding|NM_067672|nhr-41 ## {Repeats: no}

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