cbr-mir-239a
| absolute | AF16 |
| cbr-mir-239a 5arm | 62 |
| cbr-mir-239a 3arm | 2 |
| normalized | AF16 |
| cbr-mir-239a 5arm | 0.162 |
| cbr-mir-239a 3arm | 0.005 |
sblock87 (miRBase cbr-mir-239a) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-239a | 0.001 | no | no | 0.33/0.35 | 18/23/0.97 | 0.0 0.0 | 0.0 0.0 | 60 2 | 0 0 | 1 1 | 0 0 | 28 24 | 5 9 | 5arm 3arm | 1 1 | nd nd | 0.22 0.22 | 4 3 | 64 | 1 | 1 | -3 |
| Member of family miR-239a (seed UUGUACU): cel-mir-238, cbr-mir-239a, block2886_novel |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------UUGUACU--------------------------------------------------------------------------------------- | 60 | miR-239a |
| seed | -------------------------------------------------------------------------------------------AGAAUCU------------------------------------------ | 2 | novel |
| seed | --------------------------------------------------ACUACAA----------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-239a | -----------------------------------------T----TTGTACTACAATTAGGTACTG--G---------------------------------------------------------------------- | 23 | 60 |
| -------------------------------------------------TACTACAATTAGGTACTG--GA--------------------------------------------------------------------- | 20 | 2 | |
| ------------------------------------------------------------------------------------------CAGAATCTATACTAGTAC-------------------------------- | 18 | 2 | |
| cbriggsae | -------------GAGAATGACGATCCAAGTTTATGCGATTT----TTGTACTACAATTAGGTACTG--GACACCAGCAGCGAGTGTATCCAGAATCTATACTAGTACAAAAATAGCTAACAGGATTAAGAT-------- | ||
| cremanei | ----------------------AATCCAAGAT--TGCGATTT----TTGTACTACACATAGGTACTG--GACACTGAGATT---TGTATCCAGAATCTATTCTAGTGCAAAAATTGCTCTGGATT--------------- | ||
| celegans | GCTTGTCACTCAGTCAAATAACTCTACACGTT--TGCAATTT----TTGTACTACACATAGGTACTG--GACAATTTTCAA-AATATATCCAGTGTCTAGTCTAGTGCAAACATTGCTCGGTGTTGTTTGAAAAATAAGC | ||
| cbrenneri | ----------------TTGATATAACCTGAAA--TGCGGTTT----TTGTACTACACATAGGTACTG--GAAAACTTACCACAGATTATCCAGTGCTTGGTCTAGTGCAAGAATTGCTAAGGGGGTTTTCAA-------- | ||
| cjaponica | -----------------------AGGCAGCCT--TGCAGTAT----TTGTACTACACATAGGTACTGGTGAAAACGTG------TTTAACCAGTGCCTGGTCTAGTGCAAGCACTGCTCCAAGCCTATTTAGC------- | ||
| ppacificus | -------------------------ATTGTAC--TGCAATTTCACGTTGTA----ACCGGATTATTGGGGACAAACTGAAGTAACTTTTACAGA---------------------------------------------- | ||
| *** * * ***** * ** ** ** * * *** | |||
| +++++ +++++++++++++++++++++++++++++ +++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001099298 | ||
| ----- ----------------------------- --------------------- --------------------------------------------------------------- ----- | NM_077585 | ||
| cbriggsae | .........(((((..(((...((.(((( ((((((((....(((((.((( ((((((......).)))..))))).)))))...)))))))))))).)).))).)))))..... | 1.000 -33.80 | |
| cremanei | (((((.(((. .((((((( ((((((((...((((((.((( ((.((....... .)).))))).))))))..))))))))))))))))))))))) | 1.000 -38.10 | |
| celegans | ((((((.......(((((((((...((.((.. .(((((.( ((((((((.((.(((..(((( ((.......... ......))))))..))))).))))))))).))))).)))))))))))))...)))))) | 0.999 -43.29 | |
| cbrenneri | .(((...(((((.... .((((((( ((((((((.((.((((((((( ((.((((......)).)).))))))))))))).))))))))))))))).....))))).))). | 1.000 -42.40 | |
| cjaponica | ((((..... .(((((.( ((((((((.((.(((((((((((..(((.... ))).))))))))))))).))))))))).))))).....))))....... | 1.000 -43.20 | |
| ppacificus | .(((((. ....((((((..((((. .((((....))))..))))..))))))......))))). | 0.978 -13.00 |
| cbriggsae | chromosome:chrX:15175306:15175418:1 | Same_strand|Intronic_non-coding|NM_001099298|Scn2a1 ## Opposite_strand|Intronic_non-coding|NM_077585|Y62H9A.5 ## {Repeats: no} ## {MIR: cbr-mir-239a} |
| cremanei | chromosome:chrUn:26917103:26917194:-1 | intergenic |
| celegans | chromosome:chrX:11792345:11792475:1 | intergenic ## {MIR: cel-mir-239a} |
| cbrenneri | chromosome:chrUn:34416635:34416742:-1 | intergenic |
| cjaponica | chromosome:chrUn:61791080:61791177:-1 | intergenic |
| ppacificus | chromosome:chrUn:159745831:159745983:1 | Same_strand|Intronic_coding|NM_066967 |
©2008 InteRNA Genomics B.V.