sblock28_novel
| absolute | AF16 |
| sblock28_novel 5arm | 462 |
| sblock28_novel 3arm | 6 |
| normalized | AF16 |
| sblock28_novel 5arm | 1.204 |
| sblock28_novel 3arm | 0.016 |
sblock28 [novel_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.39/0.50 | 19/24/0.99 | 0.0 0.0 | 0.0 0.0 | 422 6 | 0 0 | 1 1 | 0 0 | 16 17 | 3 4 | 5arm 3arm | 1 1 | nd nd | 0.25 0.23 | 2 1 | 468 | 1 | 1 | 2 |
| Located in cluster 4: cel-mir-65, sblock26_cand, block1267_novel, cbr-mir-64, sblock28_novel |
| Member of family miR-64 (seed AUGACAC): cel-mir-65, cbr-mir-64, sblock28_novel, sblock26_cand |
| reads | miRBase family seed | ||
| seed | -----------------AUGACAC---------------------------------------------------------------------------------- | 454 | miR-64 |
| seed | -------------------------------------------------------------UUACGGU-------------------------------------- | 6 | novel |
| seed | ---------------------CACAGAA------------------------------------------------------------------------------ | 4 | novel |
| seed | ------------------UGACACA--------------------------------------------------------------------------------- | 3 | novel |
| seed | --------------------ACACAGA------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------AATGACACAGAAGAACTGGCAATG------------------------------------------------------------------ | 24 | 422 | |
| ----------------AATGACACAGAAGAACTGGCAAT------------------------------------------------------------------- | 23 | 12 | |
| ----------------AATGACACAGAAGAACTGGC---------------------------------------------------------------------- | 20 | 7 | |
| ------------------------------------------------------------ATTACGGTCTG-------TGTGCCATAGC----------------- | 22 | 6 | |
| ----------------AATGACACAGAAGAACTGG----------------------------------------------------------------------- | 19 | 6 | |
| ----------------AATGACACAGAAGAACTGGCAA-------------------------------------------------------------------- | 22 | 5 | |
| --------------------ACACAGAAGAACTGGCAATGAAA--------------------------------------------------------------- | 23 | 4 | |
| ----------------AATGACACAGAAGAACTGGCA--------------------------------------------------------------------- | 21 | 2 | |
| -----------------ATGACACAGAAGAACTGGCAATG------------------------------------------------------------------ | 23 | 2 | |
| -------------------GACACAGAAGAACTGGCAA-------------------------------------------------------------------- | 19 | 1 | |
| -----------------ATGACACAGAAGAACTGGCAAT------------------------------------------------------------------- | 22 | 1 | |
| cbriggsae | GGCTAGACATGCCTGCAATGACACAGAAGAACTGGCAATGAAACCAATACTACTTATTTCATTACGGTCTG-------TGTGCCATAGCTGGCGTGTCTCTAGCCA | ||
| cjaponica | TGTTTGCCA-------AATGACACAGAA-AGTGAGACATGAGACCAAAACGCACTTTTCCATGTTTGTCTTGATTTCCTGTGCCGCCGC------------AATCA | ||
| * * * ** ************ * * **** ***** ** * ** *** **** ****** ** * ** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++ | NM_001102902 | ||
| ---------------------------------------------------------------------------- --------------------------------- | NM_001077612 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++ | NM_065190 | ||
| ---------------------------------------------------------------------------- --------------------------------- | NM_001129219 | ||
| cbriggsae | (((((((((((((.((.(((.((((..((.((((..(((((((.............))))))).)))))). )))).))).)).)))))))))..)))). | 1.000 -40.42 | |
| cjaponica | ((.((((.. ..((.(((((.( (((((((((.......((((.....)))).......)))))).)))).))))).))..)) )).)) | 0.939 -15.64 |
| cbriggsae | chromosome:chrIII:219144:219242:-1 | Same_strand|Intronic_non-coding|NM_001102902|LOC100124966 ## Opposite_strand|Intronic_coding|NM_001077612|zgc:153009 ## Opposite_strand|Intronic_non-coding|NM_001129219|nhr-121 ## {Repeats: no} |
| cjaponica | chromosome:chrUn:83684483:83684568:1 | intergenic |
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