cel-mir-65
| absolute | AF16 |
| cel-mir-65 5arm | 332 |
| cel-mir-65 3arm | 135 |
| normalized | AF16 |
| cel-mir-65 5arm | 0.865 |
| cel-mir-65 3arm | 0.352 |
sblock25 (miRBaseHomolog cel-mir-65) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog cel-mir-65 | 0.001 | no | no | 0.50/0.55 | 19/24/0.98 | 0.0 0.0 | 0.0 0.0 | 310 114 | 0 0 | 1 1 | 0 0 | 14 17 | 9 9 | 5arm 3arm | 1 1 | nd nd | 0.23 0.26 | 4 2 | 467 | 1 | 0 | 2 |
| Located in cluster 4: cel-mir-65, sblock26_cand, block1267_novel, cbr-mir-64, sblock28_novel |
| Member of family miR-64 (seed AUGACAC): cel-mir-65, cbr-mir-64, sblock28_novel, sblock26_cand |
| reads | miRBase family seed | ||
| seed | --------------------------------AUGACA------C-------------------------------------------------------------------------------------------------- | 332 | miR-64 |
| seed | ---------------------------------------------------------------------------------CUACCGG------------------------------------------------------- | 121 | novel |
| seed | -------------------------------------------------------------------------------------CGGGUUC--------------------------------------------------- | 8 | novel |
| seed | ----------------------------------------------------------------------------------UACCGGG------------------------------------------------------ | 6 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -------------------------------CATGACA------CTGAAGCGGGAATGG------------------------------------------------------------------------------------ | 22 | 310 | |
| --------------------------------------------------------------------------------CCTACCGGGTTCAGTGTCATACT---------------------------------------- | 23 | 114 | |
| -------------------------------CATGACA------CTGAAGCGGGAATG------------------------------------------------------------------------------------- | 21 | 9 | |
| -------------------------------CATGACA------CTGAAGCGGGAAT-------------------------------------------------------------------------------------- | 20 | 9 | |
| ------------------------------------------------------------------------------------CCGGGTTCAGTGTCATACT---------------------------------------- | 19 | 7 | |
| ---------------------------------------------------------------------------------CTACCGGGTTCAGTGTCATACT---------------------------------------- | 22 | 6 | |
| --------------------------------------------------------------------------------CCTACCGGGTTCAGTGTCATACTT--------------------------------------- | 24 | 4 | |
| -------------------------------CATGACA------CTGAAGCGGGAA--------------------------------------------------------------------------------------- | 19 | 3 | |
| --------------------------------------------------------------------------------CCTACCGGGTTCAGTGTCAT------------------------------------------- | 20 | 2 | |
| -------------------------------CATGACA------CTGAAGCGGGAATGGAA---------------------------------------------------------------------------------- | 24 | 1 | |
| --------------------------------------------------------------------------------CCTACCGGGTTCAGTGTCATAC----------------------------------------- | 22 | 1 | |
| ------------------------------------------------------------------------------------CCGGGTTCAGTGTCATACTT--------------------------------------- | 20 | 1 | |
| cbriggsae | -----------------AGACCCTCACCAATCATGACA------CTGAAGCGGGAATGGAAGCGTAGTCAGATTGCAATTCCTACCGGGTTCAGTGTCATACTTGGTGCG---------------GATGAGTCTG-------- | ||
| cremanei | -------------------------------CATGACA------CCGATCTCGCGATGG---------------TCGTTTTCCAAAGCGATCGATAAGGCGGTAG--------------------AGTTGTCCTG-------- | ||
| celegans | GTGCTCTTGGAGCCATGGAGCCTTCGCCGATTATGACA------CTGAAGCGTAACCGAACACCATAT----TTTGAGATTCTGCTACGCGCAGTGCCATGCTCGGCGCGTTGGCTCCATTAAAAAACGGCCACAAAAATGCC | ||
| cbrenneri | -------------------------------AATGACA------CTGAAGTGGG--------------------CCAAGTTTTGAGTTTTTTTTTGGAACTTTG---------------------AGTGCTCATA-------- | ||
| cjaponica | -------------------------------CATGACA------CTGACAATAAGGAGG-------------TTGGGAGCTCTACGTACCTAAACTATATT------------------------AAAGTGCATA-------- | ||
| ppacificus | -------------------------------CATGACACATCGCCTGAGAATCAATCGAA--------------TTAAGTTTCATTTCGCTAATTGAATCTCAATT-------------------GAGTTTCATA-------- | ||
| ****** * ** | |||
| +++++ +++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++ +++++ | NM_001102902 | ||
| ----- --------------------- ------------------------------------------------------------------ ---------- ----- | NM_001077612 | ||
| +++++ +++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++ +++++ | NM_065190 | ||
| ----- --------------------- ------------------------------------------------------------------ ---------- ----- | NM_001129219 | ||
| cbriggsae | ((((((.((((((..(((((( (((((.(((....((((..(((((...)))))..))))..)))..)))))))))))..)))))).) )....)))). | 1.000 -40.60 | |
| cremanei | ((.(((( ....((((((.(((( ((((((....)))))))).))...)))..)) )..)))).)) | 0.964 -14.90 | |
| celegans | ..((..(((..(((((((((((..((((((.((((.(( (((..(((((...(((...((... ..))...)))...))))).))))).)))).))))))....))))))))........)))..)))....)). | 0.957 -49.40 | |
| cbrenneri | .(((((( (((((((... (((((.............))))).))))). )))).)))). | 0.997 -14.62 | |
| cjaponica | .(((.(( ((...((((.((... (((((.((.....)).))))).)).)))) ..))))))). | 1.000 -13.00 | |
| ppacificus | .((((.((.(((..(((((.((((((((( ...........))))...))))).)))))..) )))).)))). | 0.999 -16.70 |
| cbriggsae | chromosome:chrIII:218506:218602:-1 | Same_strand|Intronic_non-coding|NM_001102902|LOC100124966 ## Opposite_strand|Intronic_coding|NM_001077612|zgc:153009 ## Opposite_strand|Intronic_non-coding|NM_001129219|nhr-121 ## {Repeats: no} |
| cremanei | chromosome:chrUn:30737923:30738059:1 | Opposite_strand|Boundary_non-coding|NM_181404 ## Opposite_strand|Boundary_coding|NM_061875 ## Same_strand|Intronic_coding|NM_182266 |
| celegans | chromosome:chrIII:2172976:2173108:1 | intergenic ## {MIR: cel-mir-65} |
| cbrenneri | chromosome:chrUn:96785595:96785731:-1 | intergenic |
| cjaponica | chromosome:chrUn:125505645:125505781:-1 | Same_strand|Intronic_coding|NM_067721 |
| ppacificus | chromosome:chrUn:116309862:116309998:-1 | Opposite_strand|Intronic_coding|NM_031126 ## Opposite_strand|Boundary_coding|NM_001029437 ## Same_strand|Intronic_coding|NM_198493 |
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