sblock26_cand
| absolute | AF16 |
| sblock26_cand 5arm | 31 |
| sblock26_cand 3arm | 2 |
| normalized | AF16 |
| sblock26_cand 5arm | 0.081 |
| sblock26_cand 3arm | 0.005 |
sblock26 [novel_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.24/0.39 | 18/25/0.15 | 0.0 0.0 | 0.0 0.0 | 27 2 | 0 0 | 1 1 | 0 0 | 12 12 | 8 6 | 5arm 3arm | 1 1 | nd nd | 0.20 0.13 | 3 1 | 33 | 1 | 1 | 3 |
| Located in cluster 4: cel-mir-65, sblock26_cand, block1267_novel, cbr-mir-64, sblock28_novel |
| Member of family miR-64 (seed AUGACAC): cel-mir-65, cbr-mir-64, sblock28_novel, sblock26_cand |
| reads | miRBase family seed | ||
| seed | -------------AUGACAC------------------------------------------------------------------------------ | 31 | miR-64 |
| seed | -------------------------------------------------------------UGCUCAU------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------TATGACACTGTTTAAATGAAACAGG------------------------------------------------------------- | 25 | 27 | |
| ------------------------------------------------------------CTGCTCATTTCAGTGTCATTGAT--------------- | 23 | 2 | |
| ------------TATGACACTGTTTAAATGAAAC---------------------------------------------------------------- | 22 | 2 | |
| ------------TATGACACTGTTTAAATG-------------------------------------------------------------------- | 18 | 1 | |
| ------------TATGACACTGTTTAAATGAAA----------------------------------------------------------------- | 21 | 1 | |
| cbriggsae | GAACTCACCATCTATGACACTGTTTAAATGAAACAGGACTTTCTCTAACACACCGGGTTCCTGCTCATTTCAGTGTCATTGATT---GGTTTGATTCT | ||
| cbrenneri | ------------TATGACAC--TTTGATTCAA-------TTT---------------TTCTTGTTAATTCCACAAAAACTGAATCAAAGTGTTATT-- | ||
| ******** *** * * ** *** *** ** * *** ** * *** * ** * *** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ | NM_001102902 | ||
| ----------------------------------------------------------------------------------------- ---------------- | NM_001077612 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ | NM_065190 | ||
| ----------------------------------------------------------------------------------------- ---------------- | NM_001129219 | ||
| cbriggsae | (((.((((((((.(((((((((...((((((..(((((....(((.........))).))))).))))))))))))))).))). )))..))))). | 1.000 -29.20 | |
| cbrenneri | .((((((( (((((((((. ((( ((..((.......)).))))).)))))))))))))))). | 1.000 -20.00 |
| cbriggsae | chromosome:chrIII:218656:218750:-1 | Same_strand|Intronic_non-coding|NM_001102902|LOC100124966 ## Opposite_strand|Intronic_coding|NM_001077612|zgc:153009 ## Opposite_strand|Intronic_non-coding|NM_001129219|nhr-121 ## {Repeats: no} |
| cbrenneri | chromosome:chrUn:87393394:87393528:1 | intergenic |
©2008 InteRNA Genomics B.V.