C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

block1267_novel

block1267_novel

Cloning frequencies
absolute	AF16
block1267_novel 3arm	14
normalized	AF16
block1267_novel 3arm	0.036

block1267_novel relative cloning frequencies

block1267 [novel_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.009	no	no	0.65/0.67	18/20/0.93	0.0	0.0	13	0	1	0	27	6	3arm	1	nd	0.25	3	14	1	na	na

Clusters
Located in cluster 4: cel-mir-65, sblock26_cand, block1267_novel, cbr-mir-64, sblock28_novel

block1267 hairpin

		reads	miRBase family seed
seed	-----------------------------------------------------------------------GGACCGC---------------------------------------	14	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------CGGACCGCTGATGTGGCATG---------------------------	20	13
	----------------------------------------------------------------------CGGACCGCTGATGTGGCA-----------------------------	18	1
cbriggsae	tccgttattctttccgaaggccccgccttccatgacacccaagcgtgtctggaatgacagaatggtcctcCGGACCGCTGATGTGGCATGaacggcgggagttggtccctaaaagga
	*********************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102902
	-------------------------------------------------------------------------------------------------------------------------------	NM_001077612
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065190
	-------------------------------------------------------------------------------------------------------------------------------	NM_001129219
cbriggsae	(((..........((((....((((((...((((.(((...((((.(((((((..(((......))).)))))))))))...))).))))...))))))..)))).........)))	0.880 -46.81

cbriggsae

chromosome:chrIII:218778:218894:-1

Same_strand|Intronic_non-coding|NM_001102902|LOC100124966 ## Opposite_strand|Intronic_coding|NM_001077612|zgc:153009 ## Opposite_strand|Intronic_non-coding|NM_001129219|nhr-121 ## {Repeats: no}

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