cbr-mir-77
| absolute | AF16 |
| cbr-mir-77 5arm | 1 |
| cbr-mir-77 3arm | 4593 |
| normalized | AF16 |
| cbr-mir-77 5arm | 0.003 |
| cbr-mir-77 3arm | 11.973 |
sblock17 (miRBase cbr-mir-77-1) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-77-1 | 0.001 | no | no | 0.42/0.55 | 19/26/0.99 | 0.0 0.0 | 0.0 0.0 | 1 4494 | 0 0 | 1 1 | 0 0 | 16 15 | 1 6 | 5arm 3arm | 2 2 | nd nd | 0.17 0.14 | 2 2 | 4594 | 1 | 5 | 3 |
| Member of family miR-77 (seed UCAUCAG): cbr-mir-77, cbr-mir-77 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------UCAUCAG----------------------------------------- | 4568 | miR-77 |
| seed | ------------------------------------------------------------------CAUUUCA--------------------------------------------- | 10 | novel |
| seed | -----------------------------------------------------------------------CAUCAGG---------------------------------------- | 6 | novel |
| seed | --------------------------------------------------------------------UUUCAUC------------------------------------------- | 6 | novel |
| seed | ---------------------------------------------------------------------UUCAUCA------------------------------------------ | 2 | novel |
| seed | --------------------------AGCUGUG------------------------------------------------------------------------------------- | 1 | novel |
| seed | --------------------------------------------------------------------------CAGGCCA------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTCC---------------------------- | 21 | 4494 | |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGT------------------------------ | 19 | 29 | |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCAAAT------------------------ | 25 | 24 | |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTC----------------------------- | 20 | 11 | |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCAA-------------------------- | 23 | 8 | |
| -----------------------------------------------------------------TCATTTCATCAGGCCATAGCTGT------------------------------ | 23 | 7 | |
| -------------------------------------------------------------------ATTTCATCAGGCCATAGCTGT------------------------------ | 21 | 5 | |
| ----------------------------------------------------------------------TCATCAGGCCATAGCTGTCC---------------------------- | 20 | 4 | |
| -----------------------------------------------------------------TCATTTCATCAGGCCATAGCTG------------------------------- | 22 | 3 | |
| --------------------------------------------------------------------TTTCATCAGGCCATAGCTGTCC---------------------------- | 22 | 2 | |
| ----------------------------------------------------------------------TCATCAGGCCATAGCTGTCCA--------------------------- | 21 | 2 | |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCAAATT----------------------- | 26 | 2 | |
| -------------------------------------------------------------------------TCAGGCCATAGCTGTCCAAA------------------------- | 20 | 1 | |
| -------------------------------------------------------------------ATTTCATCAGGCCATAGCT-------------------------------- | 19 | 1 | |
| -------------------------TAGCTGTGCTCTGAGGAAATAAC---------------------------------------------------------------------- | 23 | 1 | |
| cbr-miR-77 | ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCA--------------------------- | 22 | - |
| cbriggsae | ---------GAGCTGTGAATTTGGATAGCTGTGCTCTGAGGAAATAACAATAGTCACACCCCATGTCATTTCATCAGGCCATAGCTGTCCAAATTTCTCG-GTTCG------------ | ||
| cremanei | AACTGTAAAGAGCTGTTAGTTTGGATGGCTGTGCTCTGAGGAAATACGGCT-----CATAAAATGTCATTTCATCAGGCCATAGCTGTCCAAATTATCAATGTTCGAAAGTT------ | ||
| celegans | ----------------------GGATGGTTGTGCTCTGAGGAAATACG--------CACAGAATGTCATTTCATCAGGCCATAGCTGTCC---------------------------- | ||
| cbrenneri | ---------GAGCCAATAATTTGGATGGCTGTGCCTTGAAGAAATA----------CAGTTAGTGTCATTTCATCAGGCCATAGCTGTCCAAATTGTTAG-GTTCGCCAGTTTTTTAG | ||
| cjaponica | -------GCGCATTTTCAGTTTGGATGACTGTGCTCTGAAGAAATACTGATG---ATCGTCCGTAGCATTTCATCAGGCCATAGTTGTCCAAACTGAGAG-TTGTG-TGTTTTTTCAC | ||
| **** ***** *** ****** * ****************** ***** | |||
| ----- ------------------------------------------------------------------------------------------- ----- ----- | NM_077872 | ||
| cbriggsae | ((((((.(((((((((((((((((..((((.(((((.(((..............))).))))).))))..)))))))))))))))))..)) )))). | 1.000 -43.34 | |
| cremanei | ((((.....((((((.(((((((((((((((((..((((.(((((..(((. ........)))))))).))))..))))))))))))))))).))..))))...)))) | 1.000 -39.90 | |
| celegans | (((((((((((..((((.(((((..( ((.....))).))))).))))..))))))))))) | 1.000 -23.20 | |
| cbrenneri | ((((((((((((((((((((((((.(((((.(((((( ((.....))).))))).))))).))))))))))))))))))).) ))))............. | 0.995 -44.30 | |
| cjaponica | ((((((((((((((((((..((((((..((((.(((((.((.((( ......))))).))))).))))..))))))..))))))))))))) ).))) ).......... | 0.993 -47.20 |
| cbriggsae | chromosome:chrII:12520818:12520913:-1 | Opposite_strand|Intronic_coding|NM_077872|collagen ## {Repeats: no} ## {MIR: cbr-mir-77-1} |
| cremanei | chromosome:chrUn:53585347:53585453:-1 | intergenic |
| celegans | chromosome:chrII:12519164:12519299:1 | intergenic ## {MIR: cel-mir-77} |
| cbrenneri | chromosome:chrUn:11565280:11565377:-1 | Opposite_strand|Intronic_coding|NM_031741 |
| cjaponica | chromosome:chrUn:40079835:40079940:1 | Opposite_strand|Intronic_coding|NM_001101877 |
sblock18 (miRBase cbr-mir-77-2) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-77-2 | 0.001 | no | no | 0.42/0.55 | 19/26/0.99 | 0.0 0.0 | 0.0 0.0 | 1 4494 | 0 0 | 1 1 | 0 0 | 16 15 | 1 6 | 5arm 3arm | 2 2 | nd nd | 0.17 0.14 | 2 2 | 4594 | 1 | 5 | 3 |
| Member of family miR-77 (seed UCAUCAG): cbr-mir-77, cbr-mir-77 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------UCAUCAG----------------------------------------- | 4568 | miR-77 |
| seed | ------------------------------------------------------------------CAUUUCA--------------------------------------------- | 10 | novel |
| seed | -----------------------------------------------------------------------CAUCAGG---------------------------------------- | 6 | novel |
| seed | --------------------------------------------------------------------UUUCAUC------------------------------------------- | 6 | novel |
| seed | ---------------------------------------------------------------------UUCAUCA------------------------------------------ | 2 | novel |
| seed | --------------------------AGCUGUG------------------------------------------------------------------------------------- | 1 | novel |
| seed | --------------------------------------------------------------------------CAGGCCA------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTCC---------------------------- | 21 | 4494 | |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGT------------------------------ | 19 | 29 | |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCAAAT------------------------ | 25 | 24 | |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTC----------------------------- | 20 | 11 | |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCAA-------------------------- | 23 | 8 | |
| -----------------------------------------------------------------TCATTTCATCAGGCCATAGCTGT------------------------------ | 23 | 7 | |
| -------------------------------------------------------------------ATTTCATCAGGCCATAGCTGT------------------------------ | 21 | 5 | |
| ----------------------------------------------------------------------TCATCAGGCCATAGCTGTCC---------------------------- | 20 | 4 | |
| -----------------------------------------------------------------TCATTTCATCAGGCCATAGCTG------------------------------- | 22 | 3 | |
| --------------------------------------------------------------------TTTCATCAGGCCATAGCTGTCC---------------------------- | 22 | 2 | |
| ----------------------------------------------------------------------TCATCAGGCCATAGCTGTCCA--------------------------- | 21 | 2 | |
| ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCAAATT----------------------- | 26 | 2 | |
| -------------------------------------------------------------------------TCAGGCCATAGCTGTCCAAA------------------------- | 20 | 1 | |
| -------------------------------------------------------------------ATTTCATCAGGCCATAGCT-------------------------------- | 19 | 1 | |
| -------------------------TAGCTGTGCTCTGAGGAAATAAC---------------------------------------------------------------------- | 23 | 1 | |
| cbr-miR-77 | ---------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCA--------------------------- | 22 | - |
| cbriggsae | ---------GAGCTGTGAATTTGGATAGCTGTGCTCTGAGGAAATAACAATAGTCACACCCCATGTCATTTCATCAGGCCATAGCTGTCCAAATTTCTCG-GTTCG------------ | ||
| cremanei | AACTGTAAAGAGCTGTTAGTTTGGATGGCTGTGCTCTGAGGAAATACGGCT-----CATAAAATGTCATTTCATCAGGCCATAGCTGTCCAAATTATCAATGTTCGAAAGTT------ | ||
| celegans | ----------------------GGATGGTTGTGCTCTGAGGAAATACG--------CACAGAATGTCATTTCATCAGGCCATAGCTGTCC---------------------------- | ||
| cbrenneri | ---------GAGCCAATAATTTGGATGGCTGTGCCTTGAAGAAATA----------CAGTTAGTGTCATTTCATCAGGCCATAGCTGTCCAAATTGTTAG-GTTCGCCAGTTTTTTAG | ||
| cjaponica | -------GCGCATTTTCAGTTTGGATGACTGTGCTCTGAAGAAATACTGATG---ATCGTCCGTAGCATTTCATCAGGCCATAGTTGTCCAAACTGAGAG-TTGTG-TGTTTTTTCAC | ||
| **** ***** *** ****** * ****************** ***** | |||
| ----- ------------------------------------------------------------------------------------------- ----- ----- | NM_077872 | ||
| cbriggsae | ((((((.(((((((((((((((((..((((.(((((.(((..............))).))))).))))..)))))))))))))))))..)) )))). | 1.000 -43.34 | |
| cremanei | ((((.....((((((.(((((((((((((((((..((((.(((((..(((. ........)))))))).))))..))))))))))))))))).))..))))...)))) | 1.000 -39.90 | |
| celegans | (((((((((((..((((.(((((..( ((.....))).))))).))))..))))))))))) | 1.000 -23.20 | |
| cbrenneri | ((((((((((((((((((((((((.(((((.(((((( ((.....))).))))).))))).))))))))))))))))))).) ))))............. | 0.995 -44.30 | |
| cjaponica | ((((((((((((((((((..((((((..((((.(((((.((.((( ......))))).))))).))))..))))))..))))))))))))) ).))) ).......... | 0.993 -47.20 |
| cbriggsae | chromosome:chrII:12523535:12523630:-1 | Opposite_strand|Intronic_coding|NM_077872|collagen ## {Repeats: no} ## {MIR: cbr-mir-77-2} |
| cremanei | chromosome:chrUn:53585347:53585453:-1 | intergenic |
| celegans | chromosome:chrII:12519164:12519299:1 | intergenic ## {MIR: cel-mir-77} |
| cbrenneri | chromosome:chrUn:11565280:11565377:-1 | Opposite_strand|Intronic_coding|NM_031741 |
| cjaponica | chromosome:chrUn:40079835:40079940:1 | Opposite_strand|Intronic_coding|NM_001101877 |
©2008 InteRNA Genomics B.V.