miR-Intess: cbr-lin-4

cbr-lin-4

Cloning frequencies
absolute	AF16
cbr-lin-4 5arm	1616
normalized	AF16
cbr-lin-4 5arm	4.213

block733 (miRBase cbr-lin-4) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-lin-4	0.003	no	no	0.52/0.58	18/22/0.96	0.0	0.0	1541	0	1	0	20	5	5arm	1	nd	0.15	1	1616	1	na	na

Families
Member of family lin-4 (seed CCCUGAG): cel-mir-237, cbr-lin-4, sblock71_cand

		reads	miRBase family seed
seed	------------------------------------------CCCUGAG-------------------------------------------------------------------------------------------	1613	lin-4
seed	-------------------------------------------CCUGAGA------------------------------------------------------------------------------------------	2	novel
seed	-----------------------------------------UCCCUGA--------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------TCCCTGAGACCTCAAGTGTG-------------------------------------------------------------------------------	20	1541
	-----------------------------------------TCCCTGAGACCTCAAGTGT--------------------------------------------------------------------------------	19	66
cbr-lin-4	-----------------------------------------TCCCTGAGACCTCAAGTGTGA------------------------------------------------------------------------------	21	3
	-----------------------------------------TCCCTGAGACCTCAAGTG---------------------------------------------------------------------------------	18	2
	------------------------------------------CCCTGAGACCTCAAGTGTGA------------------------------------------------------------------------------	20	1
	----------------------------------------TTCCCTGAGACCTCAAGTGTG-------------------------------------------------------------------------------	21	1
	------------------------------------------CCCTGAGACCTCAAGTGTG-------------------------------------------------------------------------------	19	1
	-----------------------------------------TCCCTGAGACCTCAAGTGTGAG-----------------------------------------------------------------------------	22	1
cbriggsae	-------------------ATCAGATGCTTTCGGCC--TGTTCCCTGAGACCTCAAGTGTGAGCGTTCTGAACATGCTTCAC-GCCTGGGCTCTCCGGGTAC------CAGGACGGTCTGAG------------------
cremanei	-----------------------------------------TCCCTGAGACCTCAAGTGTGAGCGCACTGTTGATGCTTCAC-GCCTGGGCTCTCTGGGT----------------------------------------
celegans	-----------------------------------------TCCCTGAGACCTCAAGTGTGAGTGTACTATTGATGCTTCAC-ACCTGGGCTCTCCGGGT----------------------------------------
cbrenneri	TGGTTTGGTTGGTTTGATATGATACAGCTCACGGCC--TGCTCCCTGAGACCTCAAGTGTGAGCGTACTGTAGATGCTTCAC-ACCTGGGCTCTCTGGGTAC------CAGGACGGTTCATTCGAGCAACACTTTTTTCA
cjaponica	------------------------TTGCTCACGTCC--TGTTCCCTGAGACCTCAAGTGTGAAAATAT--CTGATATCTCAC-ACCTGGGCTCTCCGGGTAC------CAGGACGGTACTATAGAGCAA-----------
ppacificus	--------------CACACCACGACTGCTAGCAAATGGCGTTCCCTGAGACCTCAATTGTGA-TGAGATACGAGTCAGTCACGGTTTGAGCTCTCATGGCACGCTATGCTTGTCGATGTTGTG-----------------
	************* *** * ** ****
	+++++ +++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++++++++ +++++	NM_001047975
	+++++ +++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++++++++ +++++	NM_001047939
	+++++ +++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++++++++ +++++	NM_101724
	----- ----------------- -------------------------------------------- ------------------- -------------- -----	NM_001011629
	+++++ +++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++++++++ +++++	NM_001055069
	+++++ +++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++++++++ +++++	NM_063457
	+++++ +++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++++++++ +++++	NM_067556
	+++++ +++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++++++++ +++++	NM_202130
	----- ----------------- -------------------------------------------- ------------------- -------------- -----	NM_014971
	+++++ +++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++++++++ +++++	NM_062776
cbriggsae	.((((((.....((.(( ((..(((.((((.((((.((((((((((.......)))).)))) )).)))).)))).)))... )))).)))))))).	1.000 -40.30
cremanei	.(((.((((.((((.(((((((.(((.......)))))))) )).)))).)))).))).	1.000 -26.50
celegans	.(((.((((.((((.((((((((((.......))))).))) )).)))).)))).))).	1.000 -24.90
cbrenneri	.......(((.((((((.((((.........((.(( ((..(((.((((.((((.((((((((((.......))))).))) )).)))).)))).)))... )))).))..)))))))))))))..........	0.893 -44.20
cjaponica	.(((((.((((( ((..(((.((((.((((.((((((...... ........)))) )).)))).)))).)))... )))))))........))))).	0.980 -40.34
ppacificus	((((.((((((....((((..((((((.((.(((((.((((((((((( (..(((....))).))))))))).))).))))).)).)))))))))).)))).)).))))	1.000 -46.10

cbriggsae	chromosome:chrII:8974959:8975052:-1	Same_strand\|Intronic_coding\|NM_001047975\|LOC683871 ## Same_strand\|Intronic_non-coding\|NM_101724\|AT1G18660 ## Opposite_strand\|Intronic_non-coding\|NM_001011629\|Mblk-1 ## {Repeats: no} ## {MIR: cbr-lin-4}
cremanei	chromosome:chrUn:41494352:41494485:1	Same_strand\|Intronic_coding\|NM_062776
celegans	chromosome:chrII:5902195:5902328:1	Same_strand\|Intronic_coding\|F59G1.4 ## {MIR: cel-lin-4}
cbrenneri	chromosome:chrUn:163746733:163746863:1	Same_strand\|Intronic_coding\|NM_062776
cjaponica	chromosome:chrUn:4235949:4236042:1	Same_strand\|Boundary_non-coding\|NR_000799 ## Same_strand\|Intronic_coding\|NM_062776
ppacificus	chromosome:chrUn:16970262:16970369:1	Opposite_strand\|Intronic_coding\|NM_138747

miR-Intess™

cbr-lin-4

block733 (miRBase cbr-lin-4) [miRNAknown_cloningHIGH_randfoldOK]