sblock71_cand
| absolute | AF16 |
| sblock71_cand 5arm | 6 |
| sblock71_cand 3arm | 66 |
| normalized | AF16 |
| sblock71_cand 5arm | 0.016 |
| sblock71_cand 3arm | 0.172 |
sblock71 [novel_cloningHIGH_multiarm_DicerOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.036 | no | no | 0.48/0.60 | 19/22/0.97 | 0.0 0.0 | 0.0 0.0 | 5 64 | 0 0 | 1 1 | 0 0 | 28 26 | 2 8 | 5arm 3arm | 1 1 | nd nd | 0.23 0.30 | 5 4 | 72 | 1 | 2 | 1 |
| Member of family lin-4 (seed CCCUGAG): cel-mir-237, cbr-lin-4, sblock71_cand |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------CCCUGAG-------------------------------------- | 66 | lin-4 |
| seed | -----------------------------ACGGUAU--------------------------------------------------------------------------------- | 6 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------TCCCTGAGTAGCTGCCGTTG-------------------------- | 20 | 64 | |
| ----------------------------AACGGTATCAACCTCAGGTAGC------------------------------------------------------------------- | 22 | 5 | |
| -----------------------------------------------------------------------TCCCTGAGTAGCTGCCGTT--------------------------- | 19 | 2 | |
| ----------------------------AACGGTATCAACCTCAGGTAG-------------------------------------------------------------------- | 21 | 1 | |
| cbriggsae | gcggcctctcgcatgctgtgtgaggctgaacggtatcaacctcaggtagcagagaccacatgactgctagcTCCCTGAGTAGCTGCCGTTGagactcgagaaagcgtgttgttgtcg | ||
| ********************************************************************************************************************* | |||
| ------------------------------------------------------------------------------------------------------------------------------- | NM_001087279 | ||
| ------------------------------------------------------------------------------------------------------------------------------- | NM_072843 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001109816 | ||
| ------------------------------------------------------------------------------------------------------------------------------- | NM_065440 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_020367 | ||
| cbriggsae | .((((.....(((((((...((((.((.(((((((.....((((((((((((...........))))))....))))))....))))))).)).))))....)))))))....)))) | 0.990 -44.10 |
| cbriggsae | chromosome:chrX:4497526:4497642:-1 | Opposite_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Same_strand|Intronic_coding|NM_001109816|MHC ## Same_strand|Intronic_non-coding|NM_020367|PARP11 ## {Repeats: no} |
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