block434_cand
| absolute | AF16 |
| block434_cand 5arm | 1 |
| normalized | AF16 |
| block434_cand 5arm | 0.003 |
block434 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.43/0.43 | 21/21/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 18 | 7 | 5arm | 2 | nd | 0.19 | 2 | 2 | 1 | na | na |
| Located in cluster 7: block433_cand, block434_cand |
| Member of family novel4 (seed ACCCUAC): block434_cand, block1560_cand |
| reads | miRBase family seed | ||
| seed | -------------------ACCCUAC-------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------TACCCTACGTCT--------GAAGAAAGT----------------------------------------------------------- | 21 | 2 | |
| cbriggsae | GAACCTTAAACGGCATGGTACCCTACGTCT--------GAAGAAAGTACAAATGTGTTCTATTGATACTTTCTCAGCCGACGGGTACCGGACCTATATGGGTTC-- | ||
| cremanei | ----------------GATACCCTACAAATTCCGGGAAGGAAAAACTATAAAT---TCCAGGCGTTTTTCTTTCA------------CGGA-TTATGTGGGGTCTC | ||
| * ******** * * * *** ** **** * * * * * * *** **** *** **** ** | |||
| cbriggsae | ((((((.....((..((((((((..((.(( (.((((((((..((((.....))))..))))))))))).))..))))))))..)).....)))))) | 1.000 -39.00 | |
| cremanei | ((.((((((((...((((.(((((((((((....... .......))))))))))). )))) ...)))))))).)) | 1.000 -30.64 |
| cbriggsae | chromosome:chrI_random:636788:636883:-1 | {Repeats: no} |
| cremanei | chromosome:chrUn:136399890:136399963:1 | Opposite_strand|Intronic_coding|NM_001006894 ## Same_strand|Intronic_coding|NM_171181 |
©2008 InteRNA Genomics B.V.