C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

block433_cand

block433_cand

Cloning frequencies
absolute	AF16
block433_cand 3arm	1
normalized	AF16
block433_cand 3arm	0.003

block433_cand relative cloning frequencies

block433 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	18	5	3arm	1	nd	0.18	2	1	1	na	na

Clusters
Located in cluster 7: block433_cand, block434_cand

block433 hairpin

		reads	miRBase family seed
seed	---------------------------------------------------------------------------AUCCUAG------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------------TATCCTAGTGCCCAAACTTTGT----------------------------------	22	1
cbriggsae	--------CAGGT---GGTGTGGTCCAAAGTTTCCGC----GATGGGTTATATAGTTATCGTTAAGACTA----TATCCTAGTGCCCAAACTTTGTACTAGATT---------------CTGAACCTGG-
celegans	CTTGGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAAGATTAGGCTTAGATTTAAGCTTAAGGTTAGACTTATCCTAGG--CATAGTCTTGAGCTTAGTTAGGCTTAGGCTTGGGCTGAGTGTGGG
ppacificus	-----------GCCGAGTTATTG--CGAGGATTATCC----TATTGGGCGAGGA--------------------TATCCTAGTGCCAGAATTCCCC----------------------------------
	* * * * * * ** * ** * * ******** * *
cbriggsae	((((( (((.((((.((((((((..(( (.((((..((((((((........))))) ))))))).)))..)))))))).)))).))) ....))))).	1.000 -32.20
celegans	((((.(((((.(((((((((((((((((.((.((((((((((((((.((((((...((((((.......)).))))..))))) ).)))))))))))))))))))))))))))))))))))))).))))	0.997 -60.20
ppacificus	...(((((...( (.((((.((((( (........)))) ))))))...))...)))))...	0.995 -16.20

cbriggsae	chromosome:chrI_random:635737:635831:-1	{Repeats: no}
celegans	chromosome:chrV:19797026:19797153:-1	intergenic ## {Repeats: (GCCTAA)n 4 145 -1 class=Simple_repeat} ## {SimpF: trf,trf}
ppacificus	chromosome:chrUn:76477541:76477675:-1	intergenic

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