cbr-mir-81
| absolute | AF16 |
| cbr-mir-81 5arm | 3 |
| cbr-mir-81 3arm | 3064 |
| normalized | AF16 |
| cbr-mir-81 5arm | 0.008 |
| cbr-mir-81 3arm | 7.987 |
sblock67 (miRBase cbr-mir-81) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-81 | 0.002 | no | no | 0.39/0.48 | 19/23/0.99 | 0.0 0.0 | 0.0 0.0 | 3 2924 | 0 0 | 1 1 | 0 0 | 13 12 | 4 8 | 5arm 3arm | 1 1 | nd nd | 0.14 0.23 | 2 2 | 3067 | 1 | 1 | 2 |
| Member of family miR-80/81/82 (seed GAGAUCA): cel-mir-82, cbr-mir-81, cbr-mir-80, cbr-mir-82 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------------GAGAUCA------------------------------------ | 3059 | miR-80/81/82 |
| seed | --------------------------------------------------------------------------------AGAUCAU----------------------------------- | 4 | novel |
| seed | ---------------------------------GGUUUUC---------------------------------------------------------------------------------- | 3 | novel |
| seed | ----------------------------------------------------------------------------------AUCAUCG--------------------------------- | 1 | miR-392 |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-81 | ------------------------------------------------------------------------------TGAGATCATCGTGAAAGCTAGT---------------------- | 22 | 2924 |
| ------------------------------------------------------------------------------TGAGATCATCGTGAAAGCTAGTT--------------------- | 23 | 54 | |
| ------------------------------------------------------------------------------TGAGATCATCGTGAAAGCTAG----------------------- | 21 | 50 | |
| ------------------------------------------------------------------------------TGAGATCATCGTGAAAGCT------------------------- | 19 | 21 | |
| ------------------------------------------------------------------------------TGAGATCATCGTGAAAGCTA------------------------ | 20 | 10 | |
| --------------------------------CGGTTTTCACCTTGATCTG-AG-------------------------------------------------------------------- | 21 | 3 | |
| -------------------------------------------------------------------------------GAGATCATCGTGAAAGCTAGT---------------------- | 21 | 2 | |
| -------------------------------------------------------------------------------GAGATCATCGTGAAAGCTAGTT--------------------- | 22 | 2 | |
| ---------------------------------------------------------------------------------GATCATCGTGAAAGCTAGT---------------------- | 19 | 1 | |
| cbriggsae | -------------------CGTGATTAACGGTCGGTTTTCACCTTGATCTG-AGAGCAATAACCAGAATGCTT--ATCTGAGATCATCGTGAAAGCTAGTTGTTACTTCACT---------- | ||
| cremanei | --------------GCCCTCGTGGCCAGCAGTCGGTTTTCACCTTGATCTG-AGAGC--TAAACATAATGCTT--ATCTGAGATCATCGTGAAAGCTAGTTGCAGGTACACAGGC------- | ||
| celegans | TGCATAAAATCAGTGCCATCGTGCCCAACAGTCGGTTTTCACCGTGATCTG-AGAGCAAT-CCAAAAATGCTT--TTCTGAGATCATCGTGAAAGCTAGTTGTTGGTCTACGGGCTTTTGCG | ||
| cbrenneri | GTGAAATAAAATATGTTCTC----CTAGCAACAGGTTCTCACTGTGATCTGCAGAGT-------ATAAAGCCTACATCTGAGATCATCGTGAAAGCCAGTTGCTTACGAACTAAATTCAT-- | ||
| cjaponica | ------------------------------GTCGGTTTTCCCATTGATCTG-AGAGC--TAACTGT-ACGCT---ATCTGAGATCATCGTGAAAGCTAGT---------------------- | ||
| ppacificus | ------------------TCACTCCCGGCATGCGGTTTTCACGTTGATCTG-AGAGC--TAATCGATATGTTT----CTGAGATCATAGTGAAAGCTACTTGCCGAAGTGA----------- | ||
| **** ** * ******* **** * * ********** ******** * * | |||
| ----- -------------------------------- --------------------- ------------------------------------- ----- | NM_001087279 | ||
| ----- -------------------------------- --------------------- ------------------------------------- ----- | NM_178655 | ||
| ----- -------------------------------- --------------------- ------------------------------------- ----- | NM_001034168 | ||
| +++++ ++++++++++++++++++++++++++++++++ +++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ +++++ | NM_001109816 | ||
| ----- -------------------------------- --------------------- ------------------------------------- ----- | NM_065440 | ||
| +++++ ++++++++++++++++++++++++++++++++ +++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ +++++ | NM_020367 | ||
| cbriggsae | .((((.((((((..(((((((((..((((((. ((((((..........))).. .))).))))))..)))))))))..))))))..)))). | 1.000 -34.60 | |
| cremanei | ..(((.((((((.((((..(((((((((..((((((. ((((( ..........)).. .))).))))))..)))))))))..)))).))).)))))). | 1.000 -39.70 | |
| celegans | .(((..........(((..((((.(((((((..(((((((((.(((((((. ((((((.. .......))).. .))).))))))).)))))))))..)))))))..)))))))...))). | 0.861 -44.52 | |
| cbrenneri | ..............((((.. ..((((((.((((.((((.(((((((.(((((( (.......))).))))))))))).)))).)))).))))))...))))......... | 0.968 -36.80 | |
| cjaponica | ...(((((((....((((((. ((((( ....... ..)). .))).))))))....)))))))... | 1.000 -17.70 | |
| ppacificus | (((((..(((((...(((((((((..((((((. ((((( ..........))). )).))))))..)))))))))...))))).))))) | 1.000 -36.00 |
| cbriggsae | chromosome:chrX:4426667:4426756:-1 | Opposite_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Same_strand|Intronic_coding|NM_001109816|MHC ## Same_strand|Intronic_non-coding|NM_020367|PARP11 ## {Repeats: no} ## {MIR: cbr-mir-81} |
| cremanei | chromosome:chrUn:34152019:34152114:-1 | Opposite_strand|Intronic_coding|NM_076043 |
| celegans | chromosome:chrX:2431059:2431176:1 | Opposite_strand|Intronic_coding|T07D1.2.1 ## {MIR: cel-mir-81} |
| cbrenneri | chromosome:chrUn:976025:976133:1 | intergenic |
| cjaponica | chromosome:chrUn:6896855:6896984:1 | intergenic |
| ppacificus | chromosome:chrUn:128697181:128697266:-1 | Same_strand|Intronic_coding|NM_022416 ## Opposite_strand|Intronic_coding|NM_001028815 ## {Repeats: GA-rich 1 89 -1 class=Low_complexity} |
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