cbr-mir-80
| absolute | AF16 |
| cbr-mir-80 5arm | 3 |
| cbr-mir-80 3arm | 1983 |
| normalized | AF16 |
| cbr-mir-80 5arm | 0.008 |
| cbr-mir-80 3arm | 5.169 |
sblock34 (miRBase cbr-mir-80) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-80 | 0.001 | no | no | 0.28/0.45 | 18/25/0.99 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 2 1 1942 | 0 0 0 | 1 1 1 | 0 0 0 | 17 39 18 | 11 -13 10 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.11 0.35 0.18 | 1 4 2 | 1986 | 1 | -2 | 1 |
| Member of family miR-80/81/82 (seed GAGAUCA): cel-mir-82, cbr-mir-81, cbr-mir-80, cbr-mir-82 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------GAGAUCA----------------------------------------------------- | 1967 | miR-80/81/82 |
| seed | ---------------------------------------------------------------------------------UGAGAUC------------------------------------------------------ | 9 | novel |
| seed | -----------------------------------------------------------------------------------AGAUCAU---------------------------------------------------- | 7 | novel |
| seed | --------------------------------------GCUUUCG------------------------------------------------------------------------------------------------- | 2 | novel |
| seed | -------------------------------------------------------------AUACGCU-------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------------------------------------------TGAGATCATTAGTTGAAAGCCG--------------------------------------- | 22 | 1942 | |
| ---------------------------------------------------------------------------------TGAGATCATTAGTTGAAAGCC---------------------------------------- | 21 | 10 | |
| --------------------------------------------------------------------------------TTGAGATCATTAGTTGAAAGCCG--------------------------------------- | 23 | 9 | |
| ---------------------------------------------------------------------------------TGAGATCATTAGTTGAAAG------------------------------------------ | 19 | 8 | |
| ----------------------------------------------------------------------------------GAGATCATTAGTTGAAAGCCGA-------------------------------------- | 22 | 5 | |
| ---------------------------------------------------------------------------------TGAGATCATTAGTTGAAAGCCGAAC------------------------------------ | 25 | 4 | |
| ---------------------------------------------------------------------------------TGAGATCATTAGTTGAAAGCCGAA------------------------------------- | 24 | 2 | |
| ----------------------------------------------------------------------------------GAGATCATTAGTTGAAAGCCG--------------------------------------- | 21 | 2 | |
| -------------------------------------AGCTTTCGACAT-GATTCT-------------------------------------------------------------------------------------- | 18 | 2 | |
| ------------------------------------------------------------AATACGCTGTCGCAATGTTG-------------------------------------------------------------- | 20 | 1 | |
| ---------------------------------------------------------------------------------TGAGATCATTAGTTGAAA------------------------------------------- | 18 | 1 | |
| cbr-miR-80 | ---------------------------------------------------------------------------------TGAGATCATTAGTTGAAAGCCGA-------------------------------------- | 23 | - |
| cbriggsae | --------------------TGGACACTCTTTCGCTCAGCTTTCGACAT-GATTCTAAACAATACGCTGTCGCAATGTTGTTGAGATCATTAGTTGAAAGCCGAACGA-TTCGAGATATCCA-------------------- | ||
| cremanei | ---------------------GGACACTCTTTCGCTCAGCTTTCGACAT-GATTCTAAACAATACGTCGAGACAATGTTGTTGAGATCATTAGTTGAAAGCCGAACGATTTTGAGATATCC--------------------- | ||
| celegans | GGTGCTTATTCCTTTTTCAATGGACACTCGTTCGCTCAGCTTTCGACAT-GATTCTGAACAATCCGCAA-GCCCATGTTGTTGAGATCATTAGTTGAAAGCCGAATGA-TCAGAGATATCCACATTCACAACCTGAAGTATT | ||
| cbrenneri | ------------------------------------CAGCTTTCGACAT-GGTTCTGAACAATACGCATTGCATATGTTGTTGAGATCATTAGTTGAAAGCCG--------------------------------------- | ||
| cjaponica | ---------------------GGTTTCTCTGTCGCTCAGCTTTCGACAT-GATTCTGAACAATTCCACACATTTATGTTGTTGAGATCATTAGTTGAAAGCCGAATGA-TTCGAGCGAACC--------------------- | ||
| ppacificus | ---------------------CGATAATCG-----TCATTTGAAGGCATGGAAGCTGATCAA--------AATTTTTATGCCGAGATCA-AAGATGAAATCAG--------------------------------------- | ||
| ** * * *** * ** * *** * ** ******* ** ***** * * | |||
| ----- ----------------------------- ---------------------------------------------------------- ------------- ----- | NM_001026518 | ||
| ----- ----------------------------- ---------------------------------------------------------- ------------- ----- | NM_001090393 | ||
| ----- ----------------------------- ---------------------------------------------------------- ------------- ----- | NM_001730 | ||
| +++++ +++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++ +++++ | NM_070558 | ||
| cbriggsae | .(((..(((..(((.((.((((((((((( (((.((.(((((((.((....))..))))))).)))))))..))))))))).)).))) ...)))...))). | 1.000 -33.90 | |
| cremanei | (((..(((..(((.((.((((((((((( ((.(((.(((((((.((....))..))))))).)))))))..))))))))).)).)))....)))...))) | 1.000 -30.80 | |
| celegans | .((((((.............((((..(((..(((.((.((((((((((( ((.(((.((((((...... ......)))))).)))))))..))))))))).)).))) ...)))...)))).............)))))). | 0.835 -36.17 | |
| cbrenneri | ..((((((((((( ((.(((.(((((((.((...))...))))))).)))))))..))))))))).. | 1.000 -22.30 | |
| cjaponica | ((((((((.((((.((.((((((((((( ((.(((.((((((.............)))))).)))))))..))))))))).)).))) )..))).))))) | 0.999 -33.52 | |
| ppacificus | .(((..((( ((.(((((.((((((((((........ ..))))))))))....))) ))))))).))).. | 1.000 -18.70 |
| cbriggsae | chromosome:chrIII:13406582:13406681:-1 | Opposite_strand|Intronic_coding|NM_001026518|Y105E8A.29 ## Opposite_strand|Intronic_non-coding|NM_001090393|Egr1 ## Same_strand|Intronic_non-coding|NM_070558|rho-1 ## {Repeats: no} ## {MIR: cbr-mir-80} |
| cremanei | chromosome:chrUn:98380888:98380986:-1 | intergenic |
| celegans | chromosome:chrIII:8865155:8865293:-1 | intergenic ## {MIR: cel-mir-80} |
| cbrenneri | chromosome:chrUn:17761140:17761279:-1 | Same_strand|Intronic_coding|NM_209159 |
| cjaponica | chromosome:chrUn:4628117:4628214:1 | Same_strand|Intronic_coding|NM_080787 ## Opposite_strand|Intronic_coding|NM_078517 |
| ppacificus | chromosome:chrUn:166478392:166478531:1 | Opposite_strand|Intronic_coding|NM_001071427 |
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