miR-Intess: cel-mir-82

cel-mir-82

Cloning frequencies
absolute	AF16
cel-mir-82 3arm	1
normalized	AF16
cel-mir-82 3arm	0.003

block2351 (miRBaseHomolog cel-mir-82) [miRBaseHomolog_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseHomolog cel-mir-82	0.002	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	18	6	3arm	1	nd	0.20	2	1	1	na	na

Families
Member of family miR-80/81/82 (seed GAGAUCA): cel-mir-82, cbr-mir-81, cbr-mir-80, cbr-mir-82

		reads	miRBase family seed
seed	----------------------------------------------------------------------GAGAUCA------------------------------------------------	1	miR-80/81/82
		len	cloning frequencies
			AF16
	---------------------------------------------------------------------TGAGATCA------------------TTCAAGAAGCCC------------------	20	1
cbriggsae	-------------TGAAATTTTCAATACGTTGGCTTTTTGGCTGGTCTCATACCGTTTAGTACTGGATATGAGATCA------------------TTCAAGAAGCCCAAAAAAGAGTTCATTTCA
cremanei	-----------CTTAGGTCATGTCTTTCACTCACTTTTTG----------------------------ATGAGATCA------------------TTCATGCACCTGCC----------------
celegans	TGAACTCATGAAATAGGTTCTTTTAGCAACCGGTTTTCTCTGTGATCTACAGAATGACAGCTAATCGTCTGAGATCATCGTGAAAGCCAGTTGTTTTTATGAACTCTTATCAAGAA---AATTCA
cbrenneri	-----CCGGGTTGTAGAATTCTTCAGTAATTAGTATCTTGTACA-------------------TAACTGTGAGATCA------------------TTCAACAGCCTTC-----------------
ppacificus	-----------------CTCTCAATTTCGCCTGCTCTCTCGTCA------------TCTCTGATCGATGAGAGATCA------------------TTCGAAA-------TGAAGAG---------
	* *****
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++	NM_071218
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++	NM_067556
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++	NM_001083250
	----- ---------------------------------------------------------------- -----------------------------------	NM_001085890
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++	NM_070819
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++	NM_002710
cbriggsae	.(((((.(((........(((((((((..(((((((((((((........))).)))))))))) ..))))))))).......)))...))))).	0.980 -31.86
cremanei	..(((((((((..(((((.(((.....)) ))))))... ..)))).)))))..	1.000 -11.80
celegans	.(((.((.(((...((((((....((((((.(((((((...(((((((.(((.((((.......))))))))))))))...))))))).)))))).....)))).))..))).)). ..))).	0.989 -37.40
cbrenneri	..(((((((.((((((((((((.((..((((...))))) ).)))).))))..) ))).)))))))..	1.000 -16.90
ppacificus	((((..((((((..((.(((((((((( ((...))).))))))))).)) ..))))) )..))))	1.000 -25.10

cbriggsae	chromosome:chrIV:149566:149659:1	Same_strand\|Intronic_coding\|NM_071218\|str-253 ## Same_strand\|Intronic_non-coding\|NM_001083250\|rom-4 ## Opposite_strand\|Intronic_non-coding\|NM_001085890\|MGC52856 ## {Repeats: no}
cremanei	chromosome:chrUn:131347292:131347425:-1	intergenic
celegans	chromosome:chrX:2435237:2435358:-1	Same_strand\|Intronic_coding\|T07D1.2.1 ## {MIR: cel-mir-82}
cbrenneri	chromosome:chrUn:117808779:117808912:1	intergenic
ppacificus	chromosome:chrUn:120702368:120702501:-1	Same_strand\|Intronic_coding\|NM_008447

miR-Intess™

cel-mir-82

block2351 (miRBaseHomolog cel-mir-82) [miRBaseHomolog_randfoldOK]