cbr-mir-79
| absolute | AF16 |
| cbr-mir-79 5arm | 24 |
| cbr-mir-79 3arm | 701 |
| normalized | AF16 |
| cbr-mir-79 5arm | 0.063 |
| cbr-mir-79 3arm | 1.827 |
sblock9 (miRBase cbr-mir-79) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-79 | 0.001 | no | no | 0.33/0.38 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 23 686 | 0 0 | 1 1 | 0 0 | 14 15 | 5 5 | 5arm 3arm | 1 1 | nd nd | 0.18 0.18 | 2 2 | 725 | 1 | 1 | 2 |
| Member of family miR-75/79 (seed UAAAGCU): cbr-mir-75, cbr-mir-79 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------------------UAAAGCU--------------------------------------------- | 700 | miR-75/79 |
| seed | --------------------------------UUUGGUG-------------------------------------------------------------------------------------------------- | 24 | novel |
| seed | --------------------------------------------------------------------------------------AAAGCUA-------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-79 | ------------------------------------------------------------------------------------ATAAAGCTAGGTTACCAAAGCT------------------------------- | 22 | 686 |
| -------------------------------CTTTGGTGATTCAGCT-------TAAATG----------------------------------------------------------------------------- | 22 | 23 | |
| ------------------------------------------------------------------------------------ATAAAGCTAGGTTACCAAAGC-------------------------------- | 21 | 9 | |
| ------------------------------------------------------------------------------------ATAAAGCTAGGTTACCAAAG--------------------------------- | 20 | 5 | |
| -------------------------------------------------------------------------------------TAAAGCTAGGTTACCAAAGCT------------------------------- | 21 | 1 | |
| -------------------------------CTTTGGTGATTCAGCT-------TAAAT------------------------------------------------------------------------------ | 21 | 1 | |
| cbriggsae | --GAACATTCT---------------CCGATCTTTGGTGATTCAGCT-------TAAATGATAGAA-TTCAGACGT----CTTCATAAAGCTAGGTTACCAAAGCTCGGCGTTCCAGTTCG---------------- | ||
| cremanei | -------GTTT---------------CCGATCTTTGGTGATTCAGCT-------TAAATGATAGAC-TCAATATGTTAGACTTCATAAAGCTAGGTTACCAAAGCTCGGCGGC------------------------ | ||
| celegans | GTAGACATTCT---------------CCGATCTTTGGTGATTCAGCT-------TCAATGATTGGC---TACAGGTTTC-TTTCATAAAGCTAGGTTACCAAAGCTCGGCGTCTTGATCTAC--------------- | ||
| cbrenneri | AGATATGGTT----------------CCGAACTTTGGTGATTCAGTT-------TTAATGATTGACGATTCAACGTTTT-CTTCATAAAGCTAGGTTACCAAAGCTCGGCGCTTCATGTCT---------------- | ||
| ppacificus | ---------------------------CG--CTTTGGTTATCTTGCTTTCTGACTAAATGTCCAAG--------------GTTCATAAAGCTAGGTTACCAAAGCT------------------------------- | ||
| cjaponica | GGTAACGTTTTGCGATGAGTGAGCTGCCGACCTTTGGTGATTAAGCT-------TAAATGATCGGC-------CGTGTTGTTTCATAAAGCTAGGTTACCAAAGCTCGGCGGTCGAAACCATACATATTTGTTTACC | ||
| ** ******* ** * * * **** ************************* | |||
| +++++ +++++++++ +++++++++++++++++++++ ++++++++++++ +++++++++ +++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001011629 | ||
| +++++ +++++++++ +++++++++++++++++++++ ++++++++++++ +++++++++ +++++++++++++++++++++++++++++++++++++++++ +++++ | NM_014333 | ||
| +++++ +++++++++ +++++++++++++++++++++ ++++++++++++ +++++++++ +++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001098517 | ||
| +++++ +++++++++ +++++++++++++++++++++ ++++++++++++ +++++++++ +++++++++++++++++++++++++++++++++++++++++ +++++ | NM_061553 | ||
| ----- --------- --------------------- ------------ --------- ----------------------------------------- ----- | NM_067080 | ||
| cbriggsae | ((((..... ((((.((((((((((..(((( (..((((.(((. ........) )))))).)))))..)))))))))).)))).......)))). | 0.990 -31.40 | |
| cremanei | ((.. ((((.((((((((((..(((( (..((((..((( .......))).....)))).)))))..)))))))))).))))..)) | 0.922 -30.00 | |
| celegans | (((((((.... ((((.((((((((((..(((( (..((((..((( .....))).. ..)))).)))))..)))))))))).)))).....)).))))) | 1.000 -34.50 | |
| cbrenneri | (((((((((. ((((.((((((((((..(((( ((.((((..((((......)))).. ..))))))))))..)))))))))).)))).))..))))))) | 1.000 -39.10 | |
| ppacificus | .( (((((((.((((.(((((.(((((..........) )).)).))))).)))).)))))))). | 1.000 -23.10 | |
| cjaponica | (((((((.......(((.((..((((((((.((((((((((..(((( (..((((.(((( ...))))..)))).)))))..)))))))))).))))))))....))))).......)))).))) | 0.920 -44.14 |
| cbriggsae | chromosome:chrI:1376275:1376366:1 | Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_061553|C13A10.1 ## Opposite_strand|Intronic_coding|NM_067080|Y66D12A.21 ## {Repeats: no} ## {MIR: cbr-mir-79} |
| cremanei | chromosome:chrUn:105203826:105203908:1 | intergenic |
| celegans | chromosome:chrI:9332939:9333034:1 | intergenic ## {MIR: cel-mir-79} |
| cbrenneri | chromosome:chrUn:27772761:27772857:-1 | intergenic |
| ppacificus | chromosome:chrUn:79886586:79886717:1 | intergenic |
| cjaponica | chromosome:chrUn:79311330:79311452:-1 | Opposite_strand|Intronic_coding|NM_001027065 |
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