cbr-mir-75
| absolute | AF16 |
| cbr-mir-75 5arm | 1 |
| cbr-mir-75 3arm | 7 |
| normalized | AF16 |
| cbr-mir-75 5arm | 0.003 |
| cbr-mir-75 3arm | 0.018 |
sblock68 (miRBase cbr-mir-75) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-75 | 0.004 | no | no | 0.45/0.48 | 20/22/1.00 | 0.0 0.0 | 0.0 0.3 | 1 7 | 0 0 | 1 1 | 0 0 | 15 15 | 6 10 | 5arm 3arm | 1 1 | nd nd | 0.19 0.24 | 2 2 | 8 | 1 | 1 | 1 |
| Member of family miR-75/79 (seed UAAAGCU): cbr-mir-75, cbr-mir-79 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------------------UAAAGCU------------------------------------------------ | 7 | miR-75/79 |
| seed | ---------------------------------------AGUCGGU---------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------------------------------------------TTAAAGCTACCAACCGCCTTC----------------------------------- | 21 | 5 | |
| ------------------------------------------------------------------------------------TTAAAGCTACCAACCGCCTT------------------------------------ | 20 | 2 | |
| --------------------------------------CAGTCGGTTGCAAGCTTCAAT--------------------------------------------------------------------------------- | 21 | 1 | |
| cbr-miR-75 | ------------------------------------------------------------------------------------TTAAAGCTACCAACCGCCTTCA---------------------------------- | 22 | - |
| cbriggsae | -----------------------TGCGAGACCGAATTGCAGTCGGTTGCAAGCTTCAATACA-----GACAATGGTTCTTGATATTAAAGCTACCAACCGCCTTCAAATCGTGCATCGCG-------------------- | ||
| cremanei | ---CTTATTTTTGACCACA----TGCATTGATGAGTTGAAGTCGGTTATAAGCTTAAATACA-----GAACATACCCGTTGTTATTAAAGCTACCAACCGACTTCAGATCATACTTTGCATACTTTTACAAAGGTAAG-- | ||
| celegans | GGTTTTTTTTTCTACTTTCTTGTTGCTTTGAAGAATTGCAGTCGGTTGCAAGCTTAAATACAAATCCGAA--------TTGTTATTAAAGCTACCAACCGGCTTCAAGTCTGAAAGAGCA--GTTGAAAAAAGGTAAGCC | ||
| cbrenneri | --CTCTGCTATTTTTGTTAATCCTGCCTCGACGAGTTGAGGTCGGTTGCAAGCTTCAATACATTTATGAAA-------TTGATATTAAAGCTACCAACCGGCTTCAAATCGAAAAGTGCGTGTTTGTTCAAAGAAGTGAG | ||
| cjaponica | ------ATTTTGAAACATAAAAGTAGCTGATGGTCTTGCAGTCGGTTGCAAGCTTAAATACA-----GACAA------TAGTTATTAAAGCTACCAACCGGCTCCAAGACTGA--TTGCCTCATTGTCTCACGAT----- | ||
| * * *** ******* ****** ****** ** * * ****************** ** ** * ** | |||
| ----- --------------------------------------- ----------------------------------------------------- ----- | NM_001087279 | ||
| ----- --------------------------------------- ----------------------------------------------------- ----- | NM_072843 | ||
| ----- --------------------------------------- ----------------------------------------------------- ----- | NM_178655 | ||
| ----- --------------------------------------- ----------------------------------------------------- ----- | NM_001034168 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001109816 | ||
| ----- --------------------------------------- ----------------------------------------------------- ----- | NM_065440 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_020367 | ||
| cbriggsae | .((((...(((.(((.((.((((((..(((((.(((((( (((....)))..)).)))).)))))..)))))).)).))).)))....)))). | 1.000 -28.80 | |
| cremanei | ((((((((((.....( ((((...((((.((((((((((((...(((((.((((.. .(((......)))..)))).)))))...)))))))))))).))))....))))).......)))))))))) | 0.998 -40.30 | |
| celegans | (((((.....(((..((((...(((((((..(((.(((.(((((((((..(((((.(((((((....... )))).))).)))))..))))))))).))).)))...)))))) )..))))..))).))))) | 0.942 -39.90 | |
| cbrenneri | (((.(((.((((((.(((...(((((...(((.(((((((((((((..(((((.((((((.((....)) .)).)))).)))))..))))))))))))).)))...)).)))...)))..)))))))))))) | 0.999 -39.30 | |
| cjaponica | ....(((.(((....((..((...((((((((.(((((((((..(((((.(((((. ..... ..)).))).)))))..))))))))).)))))))). ..))))...))).))).... | 0.971 -33.90 |
| cbriggsae | chromosome:chrX:4486715:4486806:-1 | Opposite_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Same_strand|Intronic_coding|NM_001109816|MHC ## Same_strand|Intronic_non-coding|NM_020367|PARP11 ## {Repeats: no} ## {MIR: cbr-mir-75} |
| cremanei | chromosome:chrUn:103833694:103833819:-1 | intergenic |
| celegans | chromosome:chrX:2372432:2372561:1 | intergenic ## {MIR: cel-mir-75} |
| cbrenneri | chromosome:chrUn:1025856:1025986:-1 | intergenic |
| cjaponica | chromosome:chrUn:6839248:6839363:1 | intergenic |
©2008 InteRNA Genomics B.V.