C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

block4517_cand

block4517_cand

Cloning frequencies
absolute	AF16
block4517_cand 3arm	0.500
normalized	AF16
block4517_cand 3arm	0.001

block4517_cand relative cloning frequencies

block4517 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	13	7	3arm	2	nd	0.17	2	1	1	na	na

Families
Member of family novel1 (seed AACCCAA): block4517_cand, block4979_cand

block4517 hairpin

		reads	miRBase family seed
seed	----------------------------------------------------------------AACCCAA-------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------TAACCCAA-TCACGAAAATGGCTG---------------	23	1
cbriggsae	----------GGAAAGTTCCTTTCAGCCACTTCGGTTGTGGTTATACAAACAGAAGTTGAT-ATAACCCAA-TCACGAAAATGGCTGATGGTGATGTCTG--
cbrenneri	CTGGGCTTGGCGCAGGGTCTTTGCATCT---------------------ACACAAGTTAACAATAACCCAAGTCAC-----------------ATTTCTCAA
	* * * ** * * *** * ******* ***
	+++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++++++++++++++++++++++ +++++	NM_027552
	+++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++++++++++++++++++++++ +++++	NM_001019667
	----- --------------------------------------------------- --------- ---------------------------- -----	NM_011438
cbriggsae	(((.....((..(((((((.((((((((.(((((((..(((....)))..) ))))))))) )..))))..))))))).)).....))).	0.990 -30.10
cbrenneri	.((((..((((...((((..(((...(( .....))....)))..))))..)))). ....)))).	0.627 -12.20

cbriggsae	chromosome:chrX:10971213:10971300:-1	Same_strand\|Intronic_non-coding\|NM_027552\|Kynu ## Same_strand\|Intronic_coding\|NM_001019667\|SPAC17A2.10c ## Opposite_strand\|Intronic_non-coding\|NM_011438\|Sox12 ## {Repeats: no}
cbrenneri	chromosome:chrUn:189575477:189575604:-1	Opposite_strand\|Boundary_coding\|NM_002264 ## Opposite_strand\|Exonic_coding\|NM_001014792 ## Opposite_strand\|Intronic_coding\|NM_001025113

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