miR-Intess: cbr-mir-233

cbr-mir-233

Cloning frequencies
absolute	AF16
cbr-mir-233 3arm	16
normalized	AF16
cbr-mir-233 3arm	0.042

block4811 (miRBase cbr-mir-233) [miRNAknown_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-233	0.001	no	no	0.53/0.59	19/23/0.65	0.0	1.1	15	0	1	0	16	5	3arm	1	nd	0.14	1	16	1	na	na

Families
Member of family miR-233/356/87 (seed UGAGCAA): cbr-mir-233, cbr-mir-87

		reads	miRBase family seed
seed	------------------------------------------------------------UGAGCAA--------------------------------	16	miR-233/356/87
		len	cloning frequencies
			AF16
	-----------------------------------------------------------TTGAGCAATGCGCATGTGC---------------------	19	6
	-----------------------------------------------------------TTGAGCAATGCGCATGTGCG--------------------	20	5
	-----------------------------------------------------------TTGAGCAATGCGCATGTGCGGG------------------	22	4
	-----------------------------------------------------------TTGAGCAATGCGCATGTGCGG-------------------	21	1
cbr-miR-233	-----------------------------------------------------------TTGAGCAATGCGCATGTGCGGGA-----------------	23	-
cbriggsae	AAGCATTTTTCTGTCCCGCGCATCCCTTTGTTCCAATATTCAAACCAGTAGAAAGATTATTGAGCAATGCGCATGTGCGGGACAGATTGAATAGCTG--
cremanei	--------------CCCGCTCATCCTGTTGTTCCAATATTCCAACAGCCC-AGTGATTATTGAGCAATGCGCATGTGCGGG------------------
celegans	---CATCTTTCTGTCTCGCCCATCCCGTTGCTCCAATATTCTAACAA-CA-AGTGATTATTGAGCAATGCGCATGTGCGGGATAGACTG-ATG------
cbrenneri	--GCGTCTTTCTGTCTCGCCCATCCCGTTGTTCCAATATTCCAACAA-CA-AGTGATTATTGAGCAATGCGCATGTGCGGGACAGACTG-ATGTCTGCT
cjaponica	CAGCGACCTTCCGTCTCGCCCATCCCTTTGCTCCA------TATCGA-TT-CATGATTATTGAGCAATGCGCATGTGCGGGACGGATTG-AGCGCTG--
	* * * * **** * * ***************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_018658
	------------------------------------------------------------------------------------------------------ -----	NM_009152
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_134696
	------------------------------------------------------------------------------------------------------ -----	NM_178014
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_170742
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_170741
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_077618
cbriggsae	.(((((((.((((((((((((((.((.((((((.((((.((.............)).)))))))))).).).))))))))))))))..)))).))).	1.000 -38.92
cremanei	(((((.(((..(((((((.(((((.((..((..... .)))).))))))))))))...))).)))))	0.994 -19.60
celegans	((((..((((((((((.(((..(((((((.(((((.((...... .. ...)).))))))))))))...))).))))))))))..) )))	1.000 -35.00
cbrenneri	(((((..((((((((((.(((..(((((((.(((((.((..((.. .. .)))).))))))))))))...))).))))))))))..) )))).....	1.000 -35.60
cjaponica	(((((....((((((((((.(((....((((((.( (((((. .. ..)))).)).)))))).....))).))))))))))... ..)))))	1.000 -36.90

cbriggsae	chromosome:chrX:1703782:1703878:1	Same_strand\|Intronic_non-coding\|NM_001011629\|Mblk-1 ## Opposite_strand\|Intronic_non-coding\|NM_009152\|Sema3a ## Same_strand\|Intronic_coding\|NM_134696\|CG2839 ## {Repeats: no} ## {MIR: cbr-mir-233}
cremanei	chromosome:chrUn:72771485:72771621:1	Same_strand\|Intronic_coding\|NM_077618 ## Opposite_strand\|Intronic_coding\|NM_009930
celegans	chromosome:chrX:12078515:12078601:-1	Same_strand\|Intronic_coding\|W03G11.4.2 ## {MIR: cel-mir-233}
cbrenneri	chromosome:chrUn:19160377:19160470:1	Same_strand\|Intronic_coding\|NM_001030940 ## Opposite_strand\|Intronic_coding\|NM_007735
cjaponica	chromosome:chrUn:7867828:7867915:1	Same_strand\|Intronic_coding\|NM_001071380 ## Opposite_strand\|Intronic_coding\|NM_001093204

miR-Intess™

cbr-mir-233

block4811 (miRBase cbr-mir-233) [miRNAknown_cloningOK_randfoldOK]