cbr-mir-87
| absolute | AF16 |
| cbr-mir-87 5arm | 7 |
| cbr-mir-87 3arm | 109 |
| normalized | AF16 |
| cbr-mir-87 5arm | 0.018 |
| cbr-mir-87 3arm | 0.284 |
sblock62 (miRBase cbr-mir-87) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-87 | 0.001 | no | no | 0.44/0.53 | 18/24/0.95 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 2 5 94 | 0 0 0 | 1 1 1 | 0 0 0 | 17 41 13 | 6 -13 9 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.21 0.37 0.14 | 3 4 1 | 116 | 1 | 2 | 3 |
| Member of family miR-233/356/87 (seed UGAGCAA): cbr-mir-233, cbr-mir-87 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------UGAGCAA------------------------------------------ | 108 | miR-233/356/87 |
| seed | -------------------------------------------------------------GCUG--UCA-------------------------------------------------------------- | 5 | novel |
| seed | -------------------------------------GCCUGAU---------------------------------------------------------------------------------------- | 2 | novel |
| seed | ------------------------------------------------------------------------------------GAGCAAA----------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------------------------------GTGAGCAAAGTTTCAGGTGTGC---------------------------- | 22 | 94 | |
| ----------------------------------------------------------------------------------GTGAGCAAAGTTTCAGGTGTG----------------------------- | 21 | 13 | |
| ------------------------------------------------------------CGCTG--TCAGA-ATGTCGTAG-------------------------------------------------- | 19 | 5 | |
| ------------------------------------CGCCTGATACTTTCGTCTCAACCT------------------------------------------------------------------------ | 24 | 2 | |
| ----------------------------------------------------------------------------------GTGAGCAAAGTTTCAGGT-------------------------------- | 18 | 1 | |
| -----------------------------------------------------------------------------------TGAGCAAAGTTTCAGGTGTG----------------------------- | 20 | 1 | |
| cbr-miR-87 | ----------------------------------------------------------------------------------GTGAGCAAAGTTTCAGGTGT------------------------------ | 20 | - |
| cbriggsae | -------------------GGTTGTGCCCACCCGGCCGCCTGATACTTTCGTCTCAACCTCGCTG--TCAGA-ATGTCGTAGGTGAGCAAAGTTTCAGGTGTGCCGGAACACACCCA--------------- | ||
| cremanei | AAACTTCTTCATCCATACAGGTTGTG-CCTTCCGGCCGCCTGACACTTTCGTCTCAACCTCGCTGTCTGATA-TAGTCGTAGGTGAGCAAAGTTTCAGGTGTGCCGGAACACATCCTCACTTTGCCCAGTTT | ||
| celegans | -------------------GGTTGTGCCAT-CCGGCCGCCTGATACTTTCGTCTCAACCTCGCTG--TCAGATTGGTCGTAGGTGAGCAAAGTTTCAGGTGTGCCGGAACACACCC---------------- | ||
| cbrenneri | ----------------------------------GCCGCCTGATACTTTCGTCTCAACCTCGCTTC-TCTCA-TTGTCGTAGGTGAGCAAAGTTTCAGGTGTGC---------------------------- | ||
| ppacificus | -----------------GGGGTGACGTCATGCTCGTCGCCTGA-ACTTGTA-CTCAACCTCGTCA--ATAGA-TGAGCGCAGGTGAGCAAAGTTTCAGGTGTGCGAGCTAGCGTCCCCC------------- | ||
| cjaponica | ----------------------------------GCCGCCTGACACTTTCGTCTCAACCTCGCT---TCAGA-TGGCCGTAGGTGAGCAAAGTTTCAGGTGTGC---------------------------- | ||
| * ******* **** ********** * ** ************************ | |||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_031366 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_007734 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_031362 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_031365 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001122952 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001122953 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_104252 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_059770 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_059769 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001104651 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001104706 | ||
| ----- ---------------------------------------------- ----- -------------------------------------------- ----- | NM_001087279 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_204902 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_010905 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_000092 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_000091 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001018032 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_078262 | ||
| ----- ---------------------------------------------- ----- -------------------------------------------- ----- | NM_203894 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_009655 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_073615 | ||
| cbriggsae | ((.((((.....((((((((((((.(((((...(((.((((((.(( (.... ))).)).))))))).))))).))))))).)))))..)))).)). | 1.000 -39.50 | |
| cremanei | ..................(((.(((( ..((((((((((((((.(((((...(((.((((((((((.....) ))).)).))))))).))))).))))))).))))))))))).)))............... | 0.918 -47.30 | |
| celegans | ((.((((...( ((((((((((((.(((((...(((.((((((((( ......))).)).))))))).))))).))))))).)))))).)))))). | 0.998 -43.30 | |
| cbrenneri | (((((((((.(((((...(((.((((((.... ..... ....)).))))))).))))).))))))).)) | 0.999 -23.02 | |
| ppacificus | ((((.(((((...((((((((((((( ((((... (((.((((((((( ..... ))).)).)))))))..))))).)))))).))))))..))))))))) | 1.000 -50.30 | |
| cjaponica | (((((((((.(((((...(((.(((((((( ..... .)).)).))))))).))))).))))))).)) | 1.000 -26.20 |
| cbriggsae | chromosome:chrV:6389696:6389790:1 | Same_strand|Intronic_coding|NM_031366|COL4A3 ## Same_strand|Intronic_non-coding|NM_001122952|Nfia ## Opposite_strand|Intronic_non-coding|NM_001087279|fbxl5 ## {Repeats: no} ## {MIR: cbr-mir-87} |
| cremanei | chromosome:chrUn:126942557:126942686:-1 | Same_strand|Intronic_coding|NM_073615 |
| celegans | chromosome:chrV:12038665:12038758:-1 | Same_strand|Intronic_coding|F10C2.2 ## {MIR: cel-mir-87} |
| cbrenneri | chromosome:chrUn:175577610:175577744:-1 | Same_strand|Intronic_coding|NM_073615 |
| ppacificus | chromosome:chrUn:113454284:113454380:-1 | Same_strand|Intronic_coding|NM_001014737 |
| cjaponica | chromosome:chrUn:17231967:17232101:1 | intergenic |
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