cbr-mir-36
| absolute | AF16 |
| cbr-mir-36 5arm | 6 |
| cbr-mir-36 3arm | 415 |
| normalized | AF16 |
| cbr-mir-36 5arm | 0.016 |
| cbr-mir-36 3arm | 1.082 |
sblock20 (miRBase cbr-mir-36) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-36 | 0.001 | no | no | 0.40/0.53 | 18/23/0.71 | 0.0 0.0 | 0.0 0.0 | 5 283 | 0 0 | 1 1 | 0 0 | 25 22 | 3 4 | 5arm 3arm | 1 1 | nd nd | 0.18 0.09 | 2 2 | 421 | 1 | 1 | 2 |
| Located in cluster 3: cbr-mir-36, cbr-mir-38, cbr-mir-39, cbr-mir-40, block969_novel, cel-mir-35, cbr-mir-41, cbr-mir-35 |
| Member of family miR-35/36/38/39/40/41 (seed CACCGGG): cel-mir-35, cel-mir-35, cel-mir-36, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cbr-mir-39, cbr-mir-35, cbr-mir-36, cbr-mir-40, cbr-mir-41, cbr-mir-38, block969_novel, block5129_cand |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------------CACCGGG----------------------------------------------------- | 407 | miR-35/36/38/39/40/41 |
| seed | -----------------------------------------------------------------------------------GGGUGAA------------------------------------------------- | 7 | novel |
| seed | --------------------------------------GUGAAUU---------------------------------------------------------------------------------------------- | 5 | novel |
| seed | ------------------------------------------------------------------------------UCACCGG------------------------------------------------------ | 1 | novel |
| seed | ------------------------------------UUGUGAA------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-36 | ------------------------------------------------------------------------------TCACCGGGTGAAAATTCGCAAT--------------------------------------- | 22 | 283 |
| ------------------------------------------------------------------------------TCACCGGGTGAAAATTCGC------------------------------------------ | 19 | 113 | |
| ----------------------------------------------------------------------------------CGGGTGAAAATTCGCAAT--------------------------------------- | 18 | 7 | |
| ------------------------------------------------------------------------------TCACCGGGTGAAAATTCGCAA---------------------------------------- | 21 | 7 | |
| -------------------------------------TGTGAATTT-TTGCTGCGGTGTT------------------------------------------------------------------------------- | 22 | 5 | |
| ------------------------------------------------------------------------------TCACCGGGTGAAAATTCG------------------------------------------- | 18 | 4 | |
| -----------------------------------------------------------------------------ATCACCGGGTGAAAATTCGCAAT--------------------------------------- | 23 | 1 | |
| -----------------------------------ATTGTGAATTT-TTGCTGCGG----------------------------------------------------------------------------------- | 20 | 1 | |
| cbriggsae | ATTCCAATT------------GAAACCTTCGGACCATTGTGAATTT-TTGCTGCGGTGTTACAACTAA--CATCTGTATCACCGGGTGAAAATTCGCAATGGTCCGATGGGTATTCATGTGG----------------- | ||
| cremanei | --------------------------------------GCCAATTC-TTACCGCGGTAATAGAACTGCATAGTTTCTATCACCGGGTGAAAATTCGGCTCGGATC--T------------------------------- | ||
| celegans | --------------------AGAAACCCTTGGACCAGTGTGGGTGT-CCGTTGCGGTGCTAC-ATTCTCTAATCTGTATCACCGGGTGAACACTTGCAGTGGTCC--TCGTGGTTTCT--------------------- | ||
| cbrenneri | GTTCATATTTTTCATATTCAGGGGTGGATCGGGCCTGTGCTGATTT-TTGCCGCTGTGATATTTCTAAGCCATGATTATCACCGGGCGAAAATTTGGCACAGGCC--TCGTCCGCCCT--------------------- | ||
| cjaponica | -TGCAGTGGTCCCTCGGGGCAGAAGAGCCAGGACCTACATCAGTTTCTTTCCGCGGTAATA--AATAATACATTATTATCACCGGGAGAAAAACTGGAGTAGGAC--CTGCGACTCGACTCGACCTTTATTCCGCTGTA | ||
| ppacificus | -----------------------------------GGGATGCATATTCTAACCCGGTGACTC-AATAAACAATGA--GTCACCGGGTTAGAATATG------------------TCCA--------------------- | ||
| * * ** * * ******** * * * | |||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_177732 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_214509 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_001030843 | ||
| ++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001101718 | ||
| ++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001011629 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_207243 | ||
| -------------- ------------------------- --------------------- ---------------------------------------------------- ----- | NM_171042 | ||
| cbriggsae | ...(((..( ((((((((((((((((((((((((( (..((.(((((.((((..... ....)))).)))))))..))))))))))))))))))).)))).))))..))) | 1.000 -55.80 | |
| cremanei | (((((((. (((((.((((.((((((((....)))).)))).))))))))).)))).)))....... . | 1.000 -23.80 | |
| celegans | (((((((...((((((.((..((((( .((...(((((.((( (..........)))).)))))..)).)))))..)).)))))) ....))))))) | 1.000 -43.20 | |
| cbrenneri | ....................(((((((((.(((((((((((((((( (((((...((((((..((........)).))))))..)))))))))).)))))))))) ).))))))))) | 0.944 -57.20 | |
| cjaponica | ((((((((......((((..((.(((.((((.(((((..((((((.(((((.((((.((. (((((....))))))).))))))))).))))))..))))).) )))...)))...))..))))....)))))))) | 0.964 -52.50 | |
| ppacificus | .((..(((((((((((((((((((((( (........))) ))))))))))))))))))) ))). | 1.000 -42.10 |
| cbriggsae | chromosome:chrII:7535762:7535868:1 | Opposite_strand|Intronic_non-coding|NM_177732|Slc35d1 ## Opposite_strand|Intronic_coding|NM_214509|COLP1alpha ## Same_strand|Intronic_coding|NM_001101718|LOC100009540 ## Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## {Repeats: no} ## {MIR: cbr-mir-36} |
| cremanei | chromosome:chrUn:26786598:26786664:-1 | intergenic |
| celegans | chromosome:chrII:11537753:11537846:1 | Opposite_strand|Intronic_coding|Y62F5A.9 ## {MIR: cel-mir-37} |
| cbrenneri | chromosome:chrUn:47821556:47821670:-1 | intergenic ## {SimpF: trf} |
| cjaponica | chromosome:chrUn:117591701:117591834:-1 | Opposite_strand|Intronic_coding|NM_171042 |
| ppacificus | chromosome:chrUn:47519694:47519840:1 | Same_strand|Intronic_coding|NM_001003336 |
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