cbr-mir-40
| absolute | AF16 |
| cbr-mir-40 5arm | 7 |
| cbr-mir-40 3arm | 309 |
| normalized | AF16 |
| cbr-mir-40 5arm | 0.018 |
| cbr-mir-40 3arm | 0.805 |
sblock22 (miRBase cbr-mir-40) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-40 | 0.001 | no | no | 0.50/0.57 | 18/23/0.95 | 0.0 0.0 | 0.0 0.0 | 7 263 | 0 0 | 1 1 | 0 0 | 24 24 | 4 5 | 5arm 3arm | 1 1 | nd nd | 0.23 0.23 | 2 2 | 316 | 1 | 1 | 2 |
| Located in cluster 3: cbr-mir-36, cbr-mir-38, cbr-mir-39, cbr-mir-40, block969_novel, cel-mir-35, cbr-mir-41, cbr-mir-35 |
| Member of family miR-35/36/38/39/40/41 (seed CACCGGG): cel-mir-35, cel-mir-35, cel-mir-36, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cbr-mir-39, cbr-mir-35, cbr-mir-36, cbr-mir-40, cbr-mir-41, cbr-mir-38, block969_novel, block5129_cand |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------------------CACCGGG------------------------------------------------------------------ | 297 | miR-35/36/38/39/40/41 |
| seed | ----------------------------------------------------------------------------------------------------GGGUGUC-------------------------------------------------------------- | 11 | novel |
| seed | --------------------------------------------------GCGGGUU---------------------------------------------------------------------------------------------------------------- | 7 | novel |
| seed | -----------------------------------------------------------------------------------------------UCACCGG------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-40 | -----------------------------------------------------------------------------------------------TCACCGGGTGTCAATCAGCTAG---------------------------------------------------- | 22 | 263 |
| -----------------------------------------------------------------------------------------------TCACCGGGTGTCAATCAGCT------------------------------------------------------ | 20 | 17 | |
| -----------------------------------------------------------------------------------------------TCACCGGGTGTCAATCAGCTA----------------------------------------------------- | 21 | 12 | |
| ---------------------------------------------------------------------------------------------------CGGGTGTCAATCAGCTAG---------------------------------------------------- | 18 | 11 | |
| -------------------------------------------------AGCGGGTTTTCATCGCAGTGAT-------------------------------------------------------------------------------------------------- | 22 | 7 | |
| -----------------------------------------------------------------------------------------------TCACCGGGTGTCAATCAG-------------------------------------------------------- | 18 | 4 | |
| ----------------------------------------------------------------------------------------------ATCACCGGGTGTCAATCAGCT------------------------------------------------------ | 21 | 1 | |
| -----------------------------------------------------------------------------------------------TCACCGGGTGTCAATCAGCTAGG--------------------------------------------------- | 23 | 1 | |
| cbriggsae | -------------------------CTCTGTATCCCCTGCCCTCACCCCAGCGGGTTTTCATCGCAGTGATATGACGCATTCAAACCATTTCTTATCACCGGGTGTCAATCAGCTAGGGTGTGGGCGCGGGTATCCACAGA---------------------------- | ||
| cremanei | -----------------TCCGATTGGTTGAAAGAGCCAGAACCTATACCGGT---TTAACTTCGTGGTGATATGACACATATTA--CATTCTTTATCACCGGGAGTAAAAC-----TGGTATAGGATCTGCGACTCGCTGATTGGA----------------------- | ||
| celegans | ---------AGCTTGGCTCTGGTGTCTCCGAACCTCCTGTCCGCACCTCAGTGGATGTATGCCATGATGATAAGATATCAGAAA------TCCTATCACCGGGTGTACATCAGCTAAGGTGCGGGTACAGGTGCATTTGATATCAAGGTGAGTT--------------- | ||
| cjaponica | GTGAACACTTGCAGTGGTCCCTCGGGGCAGAAGAGCCAGGACCTACATCAGT---TTCTTTCCGCGGTAATAAATAATACATTA--------TTATCACCGGGAGAAAAAC-----TGGAGTAGGACCTGCGACTC---GACTCGACCTTTATTCCGCTGTATTTTTGC | ||
| * ** * * * * * * * * *** * ********** * * * ** ** * * | |||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_177732 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_214509 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_001030843 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001101718 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001011629 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_207243 | ||
| ----- -------------------------------------------------------------------------------------------------------------------- ----- | NM_171042 | ||
| cbriggsae | .(((((..(((.(((((.(((((.(((.((((..((((.(.((((((.((...............)).)))))).)))))..)))).))).))))).))))).))).....))))) | 1.000 -47.26 | |
| cremanei | ((((((..((.....(((.((((.((((((((((( ((.(((((.((((((((............ .......))))))))))))).)))) ))))))))).))))...)))))..)))))) | 1.000 -51.31 | |
| celegans | ((((((.((.(((((((.........(((((((((((((.(((.((((((((((.((.(((((.(((.......) )).))))).)))))))))))).))).))))))))..))))).......))))))))).)))))) | 1.000 -58.59 | |
| cjaponica | (((((....((((((((......((((..((.(((.((((.(((((..(((( ((.(((((.((((.((.(((((....))) )))).))))))))).)))) ))..))))).))))...))) ...))..))))....))))))))..))))) | 0.921 -53.70 |
| cbriggsae | chromosome:chrII:7536135:7536250:1 | Opposite_strand|Intronic_non-coding|NM_177732|Slc35d1 ## Opposite_strand|Intronic_coding|NM_214509|COLP1alpha ## Same_strand|Intronic_coding|NM_001101718|LOC100009540 ## Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## {Repeats: no} ## {MIR: cbr-mir-40} |
| cremanei | chromosome:chrUn:8778754:8778872:-1 | Same_strand|Intronic_coding|NM_001011005 ## Opposite_strand|Intronic_coding|NM_171042 |
| celegans | chromosome:chrII:11538075:11538213:1 | Opposite_strand|Intronic_coding|Y62F5A.9 ## {MIR: cel-mir-40} |
| cjaponica | chromosome:chrUn:117591694:117591843:-1 | Opposite_strand|Intronic_coding|NM_171042 |
©2008 InteRNA Genomics B.V.