miR-Intess: cbr-mir-787

cbr-mir-787

Cloning frequencies
absolute	AF16
cbr-mir-787 3arm	1
normalized	AF16
cbr-mir-787 3arm	0.003

block4425 (miRBase cbr-mir-787) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-787	0.002	no	no	0.39/0.39	23/23/1.00	0.0	0.0	1	0	1	0	12	2	3arm	1	nd	0.26	3	1	1	na	na

Families
Member of family miR-231/787 (seed AAGCUCG): cbr-mir-231, cbr-mir-787

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------AAGCUCG-----------------------------------------------	1	miR-231/787
		len	cloning frequencies
			AF16
cbr-miR-787	----------------------------------------------------------------------------------TAAGCTCGTCTTAGTTTTCCT----CT----------------------------	23	1
cbriggsae	-----------CCTCAAAATGGA---------------GAAGAAGGAAACTAGACAATCTTACATA-GCTCAAAATAATCTGTAAGCTCGTCTTAGTTTTCCT----CTCCTC-------------TCTAGGGA---
cremanei	-------CTTTTTTCCACATGGATATGTGGGACCAGTGGATGAGGGAAACTAGTCGATCTCACACTAATTTGACAGAA--TGTAAGCTCGTCTTTGTTTTCCTGCATCTCTGGTCCCCCAACTTGTTCAATGGTAAG
celegans	----------------GGATGTAT---------CAGTGGACGAAAGATACAT-ACGATCTTACATC--TTCAAAATGGTATGTAAGCTCGTTTTAGTATCTTT----CGTCTCTGATCACATTCAATTAAGGTA---
cjaponica	CGATAGTTTTGTGTGTGTATGGAT-----------GGGGAAGAGGGAAACATGATGGTCTCACATT--CTTAAGATGCT-TGTAAGCTCGTCTT-GTTTCCTTCTTCTTCTTCAAATGCCACTAAATTTGTG-----
	*** * * * * * * ********* ** * * * *
	----- ------------ ---------------------------- ------------------------------------ ------ -------- -----	NM_001105250
	----- ------------ ---------------------------- ------------------------------------ ------ -------- -----	NM_004796
	----- ------------ ---------------------------- ------------------------------------ ------ -------- -----	NM_138970
	----- ------------ ---------------------------- ------------------------------------ ------ -------- -----	NM_001087279
	+++++ ++++++++++++ ++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++ ++++++ ++++++++ +++++	NM_072374
	+++++ ++++++++++++ ++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++ ++++++ ++++++++ +++++	NM_007496
	----- ------------ ---------------------------- ------------------------------------ ------ -------- -----	NM_001080396
	----- ------------ ---------------------------- ------------------------------------ ------ -------- -----	NM_001092981
cbriggsae	(((.....(((( (((((.(((((((((((...((((((.. .............))))))...))).)))))))).) ))..)) ))))))).	1.000 -24.16
cremanei	.......(((..((((((.((((((((((.(((((((((((((.((.(((.((.(((((........)).. ))).)).))).))..)))))))).)))))))))))))...)).)))))).)))....	0.993 -44.80
celegans	(((((((( (((.(((((((((((((.. ((((.(((((((( (.......)).))))))).))))....)))))))) )))))))))).))))))..........	0.996 -43.40
cjaponica	....(((((.(((.((((.((((. ((((((((((((((((.((((..((.(((.( (....)).... ))).))..)))).) ))))))))))))))))))).))))))).)))))....	0.993 -42.30

cbriggsae	chromosome:chrX:5375318:5375407:-1	Opposite_strand\|Intronic_non-coding\|NM_001105250\|NRXN3 ## Same_strand\|Intronic_coding\|NM_072374\|C33G8.2 ## Same_strand\|Intronic_non-coding\|NM_007496\|Zfhx3 ## Opposite_strand\|Intronic_coding\|NM_001080396\|FAM155A ## {Repeats: no} ## {MIR: cbr-mir-787}
cremanei	chromosome:chrUn:33359160:33359287:1	intergenic
celegans	chromosome:chrX:11294635:11294736:1	intergenic ## {MIR: cel-mir-787}
cjaponica	chromosome:chrUn:544633:544749:1	intergenic

miR-Intess™

cbr-mir-787

block4425 (miRBase cbr-mir-787) [miRNAknown_randfoldOK]