miR-Intess: cbr-mir-231

cbr-mir-231

Cloning frequencies
absolute	AF16
cbr-mir-231 3arm	90
normalized	AF16
cbr-mir-231 3arm	0.235

block1779 (miRBase cbr-mir-231) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-231	0.001	no	no	0.45/0.52	19/25/0.96	0.0	0.0	76	0	1	0	26	6	3arm	1	nd	0.17	3	90	1	na	na

Families
Member of family miR-231/787 (seed AAGCUCG): cbr-mir-231, cbr-mir-787

		reads	miRBase family seed
seed	---------------------------------------------------------------------------AAGCUCG---------------------------------------------------------	89	miR-231/787
seed	--------------------------------------------------------------------------UAAGCUC----------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------------TAAGCTCGTGAACAACAGGCAGG------------------------------------------	23	76
	--------------------------------------------------------------------------TAAGCTCGTGAACAACAGGCA--------------------------------------------	21	3
	--------------------------------------------------------------------------TAAGCTCGTGAACAACAGGCAG-------------------------------------------	22	3
	--------------------------------------------------------------------------TAAGCTCGTGAACAACAGG----------------------------------------------	19	3
	--------------------------------------------------------------------------TAAGCTCGTGAACAACAGGC---------------------------------------------	20	2
cbr-miR-231	--------------------------------------------------------------------------TAAGCTCGTGAACAACAGGCAGGA-----------------------------------------	24	1
	--------------------------------------------------------------------------TAAGCTCGTGAACAACAGGCAGGAC----------------------------------------	25	1
	-------------------------------------------------------------------------ATAAGCTCGTGAACAACAGGCA--------------------------------------------	22	1
cbriggsae	------------CTAGCACCTCAATGTTGTTCTGTCTGTTTCCATAGCTTATATTGT-------AAGGTACTTATAAGCTCGTGAACAACAGGCAGGACAACTGG-AA--GTGGTGTTTTTTTTCA-------------
cremanei	ATTCCCTCTAATCGAGCACCCCGATGTTGTTCTGACTGTTTCCATAGCTTATATTGTCTC----AAAATGCATATAAGCTCGTGAACAACAGGCAGGACAACTGGTCTTTTTGGTGTGCATTTTGATAAAACGGTGAGT
celegans	---------------GCACCAC-AGGTTGTTCTGACTGTTTCAAAAGCTTGTAGTATCTTAATAAATAAACATATAAGCTCGTGATCAACAGGCAGAACAACTCG-GT--TTTGTGTGC--------------------
cbrenneri	-----GCTAAGCCTACCTTTTC-ATGTTGTTCTGACTGTTTCAAAAGCTTATATTGTTCGTTCAAAGTTACTTATAAGCTCGTGATCAACAGGCAGGACAACTAT-CAAAGGGGCGTGC--------------------
cjaponica	------------------CCCC-TTGTGGTTCTGACTGTTTCAGTAGCTTATAGC---------CGTGGGCGTATAAGCTCGTGATCAACAGGCAGGACCAC-------------------------------------
	* ** *** * * *********** ****** **
	----- --------------------------------------------- ----------------------------------------- -- ---------------- -----	NM_001022613
	----- --------------------------------------------- ----------------------------------------- -- ---------------- -----	NM_009322
	+++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ ++ ++++++++++++++++ +++++	NM_065267
	----- --------------------------------------------- ----------------------------------------- -- ---------------- -----	NM_199029
	+++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ ++ ++++++++++++++++ +++++	NM_020180
	+++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ ++ ++++++++++++++++ +++++	NM_204893
	----- --------------------------------------------- ----------------------------------------- -- ---------------- -----	NM_199449
	+++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ ++ ++++++++++++++++ +++++	NM_153693
	----- --------------------------------------------- ----------------------------------------- -- ---------------- -----	NM_009517
	+++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ ++ ++++++++++++++++ +++++	NM_001025087
	+++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ ++ ++++++++++++++++ +++++	NM_001025088
	+++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ ++ ++++++++++++++++ +++++	NM_001025089
	----- --------------------------------------------- ----------------------------------------- -- ---------------- -----	NM_001128181
	----- --------------------------------------------- ----------------------------------------- -- ---------------- -----	NM_027712
cbriggsae	..((((((((...(((((((((((((((..(((((((((((..(( (...))).)))))))).)))...)))))))))))))))..) ). ..))))))........	1.000 -39.60
cremanei	((((((....(((((((((.((((.(((((((((.(((((..(((((((((((.(((... .....))))))))))).)))...))))).)))))))))........)))).))))...))))).....)).))))	0.912 -41.60
celegans	(((.((( (((((((((((.((((((((..((((((((.(((........)))....))))))))..)))..))))).)))))))))).. .. ..)))))))	1.000 -35.10
cbrenneri	((...(((..(((((.. ..(((((((((.((((((((..((((((((..((............)).))))))))..)))..))))).)))))))))... .))))))))..))	0.999 -39.10
cjaponica	.... ..(((((((((.((((((((..(((((((((( (...))).))))))))..)))..))))).)))))))))	1.000 -33.50

cbriggsae	chromosome:chrIII:9825068:9825171:1	Opposite_strand\|Intronic_coding\|NM_001022613\|SPBC215.13 ## Opposite_strand\|Intronic_non-coding\|NM_009322\|Tbr1 ## Same_strand\|Intronic_non-coding\|NM_065267\|R148.2 ## {Repeats: no} ## {MIR: cbr-mir-231}
cremanei	chromosome:chrUn:5285606:5285740:1	intergenic
celegans	chromosome:chrIII:7544978:7545077:-1	intergenic ## {MIR: cel-mir-231}
cbrenneri	chromosome:chrUn:17428280:17428391:1	Same_strand\|Intronic_coding\|NM_209426
cjaponica	chromosome:chrUn:140689412:140689485:-1	intergenic

miR-Intess™

cbr-mir-231

block1779 (miRBase cbr-mir-231) [miRNAknown_cloningHIGH_randfoldOK]