C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

block5080_cand

block5080_cand

Cloning frequencies
absolute	AF16
block5080_cand 3arm	0.429
normalized	AF16
block5080_cand 3arm	0.001

block5080_cand relative cloning frequencies

block5080 [novel_cloningOK_Multihit_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.35/0.40	19/21/0.83	0.0	0.0	3	0	1	0	24	12	3arm	14	nd	0.10	1	6	1	na	na

Clusters
Located in cluster 12: block5073_cand, block5080_cand

Families
Member of family novel3 (seed GAAUAAG): block5080_cand, block5073_cand

block5080 hairpin

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------------------GAAUAAG---------------------------------------------------	5	novel
seed	--------------------------------------------------------------------------------------------------AAUAAGU--------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------------------------------------------GGAATAAGTA---------GTACCAATGG------------------------------	20	3
	------------------------------------------------------------------------------------------------GGAATAAGTA---------GTACCAATGGT-----------------------------	21	1
	-------------------------------------------------------------------------------------------------GAATAAGTA---------GTACCAATGGT-----------------------------	20	1
	------------------------------------------------------------------------------------------------GGAATAAGTA---------GTACCAATG-------------------------------	19	1
cbriggsae	--------------AATTACTCGG------AATAAGTAGTACCATTATGGTACTAATTACTCGGAATAAGTAGTACCAATTCGATACTACTTACTCGGAATAAGTA---------GTACCAATGGTACTACTTACTCGGAATAAGTAGT------
celegans	TCTCCGAGTGACAAATGTGCTCTATTGTCAAATTGTTGGCAGAAATACGGTATTTATTC------ACATTTTCAGCCAATTTAAGGC-AGAAAATGTGAATAAGTACCCGTTTTTATGCCAACAATACGAGTAGAAACACACAAGTCACAGGGGA
cbrenneri	------GGAGAGGAATTTAT----------AATTCTT-----------GTTGTTTTTTTTCTTGAATAA-------------------AAATATTTTGAATAAGAAGTTCTTCTTG---------------------------------------
	* * *** * * * * ** * * * * * ******* *
	----- ---------- ---------------------------------------------------------------------------- ---------------------------------- -----	NM_011978
cbriggsae	.(((((((.( (.(((((((((((((..((((((((.(((.((.((.(((((((((.........))))))))).)).)).))).)) ))))))))))))))))))).)).))....)))))	1.000 -48.90
celegans	(((((..(((((...((((.((((((((...((((((((((.(((.((((((((((((( ((((((((.(((.......))) .))))))))))))))))))).)).))).)))))))))))).))))))..))))...))))).)))))	1.000 -68.10
cbrenneri	.(((((((((((.. .((((.. ..(((((((.((....)).)) )))))....))))...))))))))))).	0.999 -16.80

cbriggsae	chromosome:chrX:14750925:14751044:1	Opposite_strand\|Intronic_non-coding\|NM_011978\|Slc27a2 ## {SimpF: trf}
celegans	chromosome:chrIII:1903361:1903508:1	Opposite_strand\|Intronic_coding\|B0524.6
cbrenneri	chromosome:chrUn:147612608:147612767:-1	intergenic ## {SimpF: trf}

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