C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

block818_novel

block818_novel

Cloning frequencies
absolute	AF16
block818_novel 3arm	2.333
normalized	AF16
block818_novel 3arm	0.006

block818_novel relative cloning frequencies

block818 [novel_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.39/0.43	18/23/0.80	0.0	1.4	5	0	1	0	22	5	3arm	3	nd	0.13	2	5	1	na	na

Families
Member of family novel6 (seed AUCACAA): block818_novel, block1069_novel

block818 hairpin

		reads	miRBase family seed
seed	----------------------------------------------------------------------------------AU--------------CACAA------------------------------------------	5	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------------------------TAT--------------CACAAGAACAGATCC---AGC--------------------------	21	2
	---------------------------------------------------------------------------------TAT--------------CACAAGAACAGATCC---AGCAC------------------------	23	2
	---------------------------------------------------------------------------------TAT--------------CACAAGAACAGATCC--------------------------------	18	1
cbriggsae	CATGAATGGTCAGGTTACCAG-----------TCGACCTGTGCTGCCTCTTTCTTTCGTGATATTTTTCACAGCGTAAAAATAT--------------CACAAGAACAGATCC---AGCACAGGTCGTTTACCTGACATTTAT--
cremanei	GACACTCGGCTAGTCTTCCGG---------------------------------------AACTTTTCGAAAGTATC------------------------------------------ACAAGCTGGCAGAATGAC--------
cbrenneri	CTCGAGCAGCTGAAGCTCCAATGTGGTGGAATTCGATCATTATTCATGTTTGTGATAAGAACATTTTTCAAAGCTTTGAAAAATGTTCTTATCACAAACATGAATAATGATCACCTTGCCAAAGGTGGAAATTTCAAGCCTGGAG
cjaponica	---------CTAGCTTCTCGAT--------------------------------------ACCTTGTCCAA--CTTCAA-----------------------GTGGAAGATCA------CAAGGGCGACGAGCTGA---------
	* * ** * * * * * * * *
	-------------------------- ---------------------------------------------------- --------------- --------------------------- -----	NM_001030387
cbriggsae	.((((((.(((((((...... .((((((((((((..((((((((..(((((((((((........)))))))) )))))))).)))..) )))))))))))...)))))))))))))	1.000 -51.60
cremanei	..((.((.(((((.(((...( (((((.....)))).)) ..)))))))).)).))..	0.997 -12.70
cbrenneri	(((.((..(((((((.((((...((((((.....(((((((((((((((((((((((((((((((((((((....)))))))))))))))))))))))))))))))))))))...))))))....))))..))))).)))).)))	0.941 -70.30
cjaponica	.((((((.(((.. .((((((.... ((((.. ...))))...) ))))).))).)))))).	1.000 -21.30

cbriggsae	chromosome:chrII:12876993:12877107:-1	Opposite_strand\|Intronic_non-coding\|NM_001030387\|ARIH1 ## {Repeats: no}
cremanei	chromosome:chrUn:145159924:145160078:1	Opposite_strand\|Boundary_coding\|NM_059414 ## Opposite_strand\|Intronic_coding\|NM_007741
cbrenneri	chromosome:chrUn:76323104:76323248:-1	intergenic
cjaponica	chromosome:chrUn:397107:397261:1	Opposite_strand\|Intronic_coding\|NM_001040096 ## Opposite_strand\|Boundary_coding\|NM_077467

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