C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

block1486_novel

block1486_novel

Cloning frequencies
absolute	AF16
block1486_novel 5arm	3
normalized	AF16
block1486_novel 5arm	0.008

block1486_novel relative cloning frequencies

block1486 [novel_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.009	no	no	0.57/0.62	21/23/1.00	0.0	0.0	4	0	1	0	8	0	5arm_loop	2	nd	0.24	2	6	1	na	na

Families
Member of family novel2 (seed CUCGGUC): block1486_novel, block1488_cand

block1486 hairpin

		reads	miRBase family seed
seed	---------------------CUCGGUC---------------------------------------------------------------------------------	6	novel
		len	cloning frequencies
			AF16
	--------------------ACTCGGTCCGGAGTCAATGGG--------------------------------------------------------------------	21	4
	--------------------ACTCGGTCCGGAGTCAATGGGTT------------------------------------------------------------------	23	1
	--------------------ACTCGGTCCGGAGTCAATGGGT-------------------------------------------------------------------	22	1
cbriggsae	---TCATTC---------TCACTCGGTCCGGAGTCAATGGGTTATC----ATTC--TCAACCTTCCCATTGGCACCAACTTGCACCGTTGTGTTTTGT-----------
cbrenneri	CTTCCGATTTCATGAAGGTCGCTCGGTCCGGAGTCAATGGGTTACC-ATAATTCACCCCATTCTGCCATTGACACCAACTTG-ACCGTTGCTTTTTGGAGAGATTGTAG
cjaponica	CGACAATTCTT-------TCACTCGGTCCGACGTCGGTGGGTTATCAATGAATC--TGAACCCTCCCATCGGCACCAACTTG-ACCGTTG--TTTTACCTGAATTTTTG
	* ***** * ******* * * ** * * **** * ******** *** **
	----- ------ ---------------------------- ---- ------------------------------------------ -----	NM_117511
	+++++ ++++++ ++++++++++++++++++++++++++++ ++++ ++++++++++++++++++++++++++++++++++++++++++ +++++	NM_001030661
	+++++ ++++++ ++++++++++++++++++++++++++++ ++++ ++++++++++++++++++++++++++++++++++++++++++ +++++	NM_066606
cbriggsae	.((... .(((.((((..((.(((((((((..... .... ........))))))))).)).......))))..)))...)).	0.950 -20.33
cbrenneri	....(((((((..((((((....(((((.((.((((((((...... ..................)))))))).)).....) ))))..))))))....)))))))...	0.985 -27.66
cjaponica	(((.(((((.. ..((.(((((....(((((((((...(((....... ))).....)))))))))........) ))))..) ).......))))).)))	0.833 -22.60

cbriggsae	chromosome:chrIII:8971628:8971707:-1	Opposite_strand\|Intronic_non-coding\|NM_117511\|CKI1 ## Same_strand\|Intronic_non-coding\|NM_001030661\|SETD1B ## Same_strand\|Intronic_coding\|NM_066606\|lin-12 ## {Repeats: no}
cbrenneri	chromosome:chrUn:17628257:17628363:-1	Same_strand\|Intronic_coding\|NM_209159
cjaponica	chromosome:chrUn:128595930:128596026:1	Same_strand\|Intronic_coding\|NM_145621

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