miR-Intess: cbr-mir-47

cbr-mir-47

Cloning frequencies
absolute	AF16
cbr-mir-47 3arm	90
normalized	AF16
cbr-mir-47 3arm	0.235

block5238 (miRBase cbr-mir-47) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-47	0.001	no	no	0.55/0.57	20/22/1.00	0.0	0.0	73	0	1	0	16	11	3arm	1	nd	0.10	1	90	1	na	na

Families
Member of family miR-46/47 (seed GUCAUGG): cbr-mir-47, cbr-mir-46

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------GUCAUGG------------------------------------------------------	90	miR-46/47
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------------------TGTCATGGAGGCGCTCTCTTC-----------------------------------------	21	73
	--------------------------------------------------------------------------------TGTCATGGAGGCGCTCTCTT------------------------------------------	20	17
cbr-miR-47	--------------------------------------------------------------------------------TGTCATGGAGGCGCTCTCTTCA----------------------------------------	22	-
cbriggsae	------------------TAGCTGAGGAAGACTGAAGGGAGCTTTCTTTTGACAGTTCG---ATTTCGAAC---TCTTACTGTCATGGAGGCGCTCTCTTCAGGT-----GAACTCTGGCTC--------------------
cremanei	TAAGGTAAGTTTCGAAAAAAGCCGAGTGAGACTGAAGAGAGCATTCTGTTGACAGTTCG---ATTCCGAAC---TCCTACTGTCATGGAGGCGCTCTCTTCAGGT-----GATCTCTGGCTAGTTTTTCTTTGTTTTTCTTG
celegans	CAAGGTTAGTTGATCGAG-AGCCGACTGAAACTGAAGAGAGCAGTCTATTGACAGT-CGGTTACTCGAAAT---CTTTACTGTCATGGAGGCGCTCTCTTCAGAT-----GATGTCTGGCCCATTTTT--TAATCAATTTTG
cbrenneri	--------------------GCCGAGAGAAGCTGAAGGGAGCTTTCTGGTGACAGTTCG---ATTTTGAAC---TCTTACTGTCATGGAGGCGCTCTCTTCAGAT-----GATCTTTGGCTGCTTTTT--------------
cjaponica	--CGGTAAGTTGGCCAAAAGACCGGGTGAAGCTGAAGAGAGCCGTCCTTTGACAGTTCGTCCACGTGGAAT--ATCGTGCTGTCATGGAGTCGCTCTCTTCAGAT-----GACCAC-GGTCTTTCTTGGTTTTTTCTTTTTG
ppacificus	----ACCAGGACCCCCGGCACCACGCAGAGACCGAAGAGAGCCTTCTGTTGACAGTGCGGGCCGTTGGTGCTAATGCTATTGTCATGGAGTCGCTCTCTTCAGGCTTGTGGTCCTCAGGGTACGGT----------------
	* * * ** ***** * ******** ********** * **
	----- ----------------------------------------- --------- ------------------------------- ------------ -----	NM_072416
cbriggsae	.(((((((.....((((((((((((((((..(((((((((( ....))).. ....))))))).))))).))))))))))).. ...))).)))).	1.000 -40.50
cremanei	(((((........(((((((((((((.....(((((((((((.(((((.(((((((..( (........ ))..))))))))))))..))))))))))).. ...))).))))..))))))........)))))	0.999 -47.19
celegans	(((((((.(((((..((. .((((((.....(((((((((((.((((..((((((( .((((......))) )...)))))))...))))))))))))))).. ...))).)))...))..) )))).)))))))	1.000 -48.50
cbrenneri	(((((((....((((((((((((((((.((((((((..( (........ ))..))))))))))))).))))))))))).. ..)))).)))........	1.000 -41.80
cjaponica	(((.(((..((((((((((((((((....(((((((((((..(((..(((((((.(((((....))).. ..)).))))))).)))...))))))))))).. .))).) )))))))..)))))....))).)))	0.998 -57.60
ppacificus	(((...((((..((.(((((...(((.(((((((((((((((...(((((((((.(((.......)))...)).))))))).))))..))))))))).))))))))))))...))))..)))	0.996 -51.00

cbriggsae	chromosome:chrX:19620645:19620737:1	Opposite_strand\|Intronic_coding\|NM_072416\|str-204 ## {Repeats: no} ## {MIR: cbr-mir-47}
cremanei	chromosome:chrUn:96562078:96562208:1	intergenic
celegans	chromosome:chrX:13921158:13921287:1	intergenic ## {MIR: cel-mir-47}
cbrenneri	chromosome:chrUn:53134808:53134904:1	Same_strand\|Intronic_coding\|NM_001047803
cjaponica	chromosome:chrUn:55670811:55670942:1	Same_strand\|Intronic_coding\|NM_137355
ppacificus	chromosome:chrUn:163065262:163065383:1	intergenic

miR-Intess™

cbr-mir-47

block5238 (miRBase cbr-mir-47) [miRNAknown_cloningHIGH_randfoldOK]