cbr-mir-46
| absolute | AF16 |
| cbr-mir-46 5arm | 71 |
| cbr-mir-46 3arm | 131 |
| normalized | AF16 |
| cbr-mir-46 5arm | 0.185 |
| cbr-mir-46 3arm | 0.341 |
sblock38 (miRBase cbr-mir-46) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-46 | 0.001 | no | no | 0.45/0.53 | 19/22/0.98 | 0.0 0.0 | 0.0 0.0 | 70 111 | 0 0 | 1 1 | 0 0 | 17 16 | 4 4 | 5arm 3arm | 1 1 | nd nd | 0.18 0.14 | 2 3 | 202 | 1 | 2 | 1 |
| Member of family miR-46/47 (seed GUCAUGG): cbr-mir-47, cbr-mir-46 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------------GUCAUGG---------------------------------------------------- | 131 | miR-46/47 |
| seed | ---------------------------------------AGAGAGC--------------------------------------------------------------------------------------------------- | 71 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -------------------------------------------------------------------------------------TGTCATGGAGTCGCTCTCTTC--------------------------------------- | 21 | 111 | |
| --------------------------------------AAGAGAGCCGTCTATTGACAGT------------------------------------------------------------------------------------- | 22 | 70 | |
| -------------------------------------------------------------------------------------TGTCATGGAGTCGCTCTCTT---------------------------------------- | 20 | 17 | |
| -------------------------------------------------------------------------------------TGTCATGGAGTCGCTCTCT----------------------------------------- | 19 | 3 | |
| --------------------------------------AAGAGAGCCGTCTATTGAC---------------------------------------------------------------------------------------- | 19 | 1 | |
| cbr-miR-46 | -------------------------------------------------------------------------------------TGTCATGGAGTCGCTCTCTTCA-------------------------------------- | 22 | - |
| cbriggsae | ---------------------AGATACAAGTGAAGCTGAAGAGAGCCGTCTATTGACAGTTC--GCTTGTT-----TCATG-TGCTGTCATGGAGTCGCTCTCTTCAG----ATGATC----------------TGAATCTA--- | ||
| cremanei | -----AAGTTTTCAACCGAATAAGAGGAGGTAAAGCTGAAGAGAGCCGTCTATTGACAGTTC--GTTTCTA--TACTTATG-TACTGTCATGGAGTCGCTCTCTTCAG----ATGATC-----CTTTCAAGGTTTTTATCTT--- | ||
| celegans | -----AGGGTCCAAA------CTGCTGAGGTGAAGCTGAAGAGAGCCGTCTATTGACAGTTCAAGACCACGAGTCGTTGTG-TGCTGTCATGGAGTCGCTCTCTTCAG----ATGATC----CGGTCAATGGTATTTT------- | ||
| cbrenneri | -----------------------------------CTGAAGAGAGCCGTCTATTGACAGTTC--GTCTCTGTTCAGTCAGG-TACTGTCATGGAGTCGCTCTCTTCAG----ATGATC--------------------TCTTGCC | ||
| cjaponica | CGGTAAGTTGGCCAA------AAGACCGGGTGAAGCTGAAGAGAGCCGTCCTTTGACAGTTC--GTCCACGTGGAATATCG-TGCTGTCATGGAGTCGCTCTCTTCAG----ATGACCACGGTCTTTCTTGGTTTTTTCTTTTTG | ||
| ppacificus | --ACCAGGACCCCCG------GCACCACGCAGAGACCGAAGAGAGCCTTCTGTTGACAGTGC-GGGCCGTTGGTGCTAATGCTATTGTCATGGAGTCGCTCTCTTCAGGCTTGTGGTC-------CTCAGGGTACGGT------- | ||
| * ********** ** ******** * * * * * *********************** ** * | |||
| +++++ +++++++++++++++++++++++++++++++++++++++++ +++++++ +++++ ++++++++++++++++++++++++++ ++++++ ++++++++ +++++ | NM_005249 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++ +++++++ +++++ ++++++++++++++++++++++++++ ++++++ ++++++++ +++++ | NM_068288 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++ +++++++ +++++ ++++++++++++++++++++++++++ ++++++ ++++++++ +++++ | NM_059518 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++ +++++++ +++++ ++++++++++++++++++++++++++ ++++++ ++++++++ +++++ | NM_067241 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++ +++++++ +++++ ++++++++++++++++++++++++++ ++++++ ++++++++ +++++ | NM_001021511 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++ +++++++ +++++ ++++++++++++++++++++++++++ ++++++ ++++++++ +++++ | NM_001086163 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++ +++++++ +++++ ++++++++++++++++++++++++++ ++++++ ++++++++ +++++ | NM_001110403 | ||
| cbriggsae | ((((...((.....(((((((((((..((((.(((((((.. ((..... ....) ))))))))))))...))))))))))) .....) )..)))). | 1.000 -34.10 | |
| cremanei | (((.....((((.....((((((.......(((((((((((..((((.(((((((.( ((..... .....))) .)))))))))))...))))))))))) ....)) ))))...)))).....))) | 0.968 -41.50 | |
| celegans | ((((((((.. ..((((.(((....(((((((((((..((((.(((((((.((((((.....))).))).. .)))))))))))...))))))))))) ...))) ))))...))).))))) | 0.851 -43.00 | |
| cbrenneri | (((((((((((..((((.(((((((.. ...((((......)))) .)))))))))))...))))))))))) ...... ....... | 0.995 -33.10 | |
| cjaponica | (((.(((..(((((( ((((((((((....(((((((((((..(((..(((((((.( ((((....)))....)) .))))))).)))...))))))))))) ...))).))))))))..)))))....))).))) | 0.998 -57.60 | |
| ppacificus | (((...((((..( (.(((((...(((.(((((((((((((((...((((((((( .(((.......)))...)).))))))).))))..))))))))).))))))))))) )...))))..))) | 0.996 -51.00 |
| cbriggsae | chromosome:chrIII:7878494:7878586:1 | Same_strand|Intronic_coding|NM_005249|FOXG1 ## Same_strand|Intronic_non-coding|NM_067241|epc-1 ## {Repeats: no} ## {MIR: cbr-mir-46} |
| cremanei | chromosome:chrUn:22211368:22211490:-1 | Same_strand|Intronic_coding|NM_001104800 |
| celegans | chromosome:chrIII:13660382:13660499:1 | intergenic ## {MIR: cel-mir-46} |
| cbrenneri | chromosome:chrUn:26379438:26379520:-1 | Same_strand|Intronic_coding|NM_001043931 |
| cjaponica | chromosome:chrUn:55670811:55670942:1 | Same_strand|Intronic_coding|NM_137355 |
| ppacificus | chromosome:chrUn:163065262:163065383:1 | intergenic |
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