cbr-mir-240
| absolute | AF16 |
| cbr-mir-240 3arm | 25 |
| normalized | AF16 |
| cbr-mir-240 3arm | 0.065 |
sblock81 (miRBase cbr-mir-240) [miRNAknown_cloningHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-240 | 0.001 | no | no | 0.43/0.48 | 21/23/1.00 | 0.0 0.4 | 0.0 0.0 | 1 25 | 0 0 | 1 1 | 0 0 | 31 20 | -45 7 | loop 3arm | 1 1 | nd nd | 0.14 0.17 | 1 1 | 26 | 1 | na | na |
| Located in cluster 11: cbr-mir-240, cbr-mir-786 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------ACUGGCC---------------------------------- | 14 | miR-240 |
| seed | ---------------------------------------------------------------------------UACUGGC----------------------------------- | 11 | novel |
| seed | --------------------------------GAGAAUU------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-240 | ---------------------------------------------------------------------------TACTGGCCTCCAAATTTTCGCT-------------------- | 22 | 14 |
| --------------------------------------------------------------------------ATACTGGCCTCCAAATTTTCGCT-------------------- | 23 | 11 | |
| -------------------------------CGAGAATTTCGAGGCCTGAAT----------------------------------------------------------------- | 21 | 1 | |
| cbriggsae | CGCTGTCTTTATTTTGAAACTGTTTTCAAATCGAGAATTTCGAGGCCTGAATGCAA--GAACCGTTTTGAG--CATACTGGCCTCCAAATTTTCGCTTTGAATTTTAGTTACGCGTG | ||
| celegans | -----------------------------ATCGAGGATTTTGAGACTAGAATGCTT--GAATTGTACTAG---CATACTGGCCCCCAAATCTTCGCT-------------------- | ||
| cbrenneri | -----------------------------AGCTGAGATATGCTGCTCTGAACGCAACGGAGTTACCCGAAAGCTCTACTGGCGGCTCTATCTAGTCT-------------------- | ||
| * * ** * * *** ** ** ******* * ** * ** | |||
| ------------------------------------------------------------- ------------- ------------------------------------------------- | NM_003107 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++ | NM_177736 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++ | NM_133381 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001110160 | ||
| cbriggsae | (((..((........))(((((..((((((.(((((((((.((((((.(.((((.. (((....)))..) ))).).)))))).))))))))).))))))...)))))..))).. | 1.000 -36.80 | |
| celegans | ..(((((((((.....((((.(((((. ..........)) ))).)))).....))))))))).. | 1.000 -17.10 | |
| cbrenneri | .(((.(((((.((((((......((..(((......)))...))......))))))..)))))))).. | 0.909 -18.30 |
| cbriggsae | chromosome:chrX:13573430:13573542:1 | Opposite_strand|Intronic_non-coding|NM_003107|SOX4 ## Same_strand|Intronic_non-coding|NM_177736|Lrrc61 ## {Repeats: no} ## {MIR: cbr-mir-240} |
| celegans | chromosome:chrX:7882536:7882688:1 | intergenic ## {MIR: cel-mir-240} |
| cbrenneri | chromosome:chrUn:5547325:5547477:-1 | Opposite_strand|Intronic_coding|NM_071398 ## Same_strand|Intronic_coding|NM_074807 |
©2008 InteRNA Genomics B.V.