logoC.briggsae small RNAs


miR expression

cbr-mir-786

cbr-mir-786

Cloning frequencies
absoluteAF16
cbr-mir-786 3arm21
normalizedAF16
cbr-mir-786 3arm0.055
cbr-mir-786 relative cloning frequencies

block5032 (miRBase cbr-mir-786) [miRNAknown_cloningOK_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBase cbr-mir-7860.001nono0.43/0.4522/23/1.000.0
0.0
19
0
1
0
14
5
3arm
1
nd
0.13
2
211nana
Clusters
Located in cluster 11: cbr-mir-240, cbr-mir-786
block5032 hairpin
  readsmiRBase family seed
seed     ------------------------------------------------------------------AAUGCCC---------------------------------------     21miR-786
  lencloning frequencies
   AF16
cbr-miR-786     -----------------------------------------------------------------TAATGCCCTGTACGAGATTTGGT------------------------     2319
      -----------------------------------------------------------------TAATGCCCTGTACGAGATTTGG-------------------------     222
cbriggsae     ----------GGGACCCTTCCCAACAAAATCTCAAATAGTGGCATTTACACAAGCAATGGTA-TGTAATGCCCTGTACGAGATTTGGTTGGTGAGAAGTCTC----------      
cremanei     -------------------------AGAGTCTCGGACAG-GGCATTTACATACAAGATAAATTTGTAATGCCCTTGCTGAGATTCC--------------------------      
celegans     AGTAAGTAAAGGGATAGTTCCCGATCGAATATCAGTTGG-GGTATTTACA-AAAAGACAAAATTGTAATGCCCTGAATGATGTTCAATCGGTGATGAATCTCATTTTTTATT      
                                 * * **     * ** ******* *    *      ***********    **  **                                  
 -----          ---------------------------------------------------- ---------------------------------------          -----NM_003107
 +++++          ++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++          +++++NM_177736
 +++++          ++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++          +++++NM_133381
 +++++          ++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++          +++++NM_001110160
cbriggsae               (((((.((..(((((.(((((((..((((.((((((...(((.((....)). )))))))))))))..))))))).)))))..))..)))))               1.000 -35.20
cremanei                              .(((((((((..(( ((((.(((((.............)))))))))))..))))))))).                               1.000 -26.42
celegans     ((((((.((.(((((.((..(((((.((((((((.(((( ((((.((((( (..........)))))))))))))).)))))))).)))))..))..))))).)).))))))     1.000 -38.70

cbriggsaechromosome:chrX:13573558:13573648:1Opposite_strand|Intronic_non-coding|NM_003107|SOX4 ## Same_strand|Intronic_non-coding|NM_177736|Lrrc61 ## {Repeats: no} ## {MIR: cbr-mir-786}
cremaneichromosome:chrUn:181380:181510:-1intergenic
celeganschromosome:chrX:7882686:7882795:1intergenic ## {MIR: cel-mir-786}


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