miR-Intess: block2837

block2837_cand

Cloning frequencies
absolute	AF16
block2837_cand 5arm	1
normalized	AF16
block2837_cand 5arm	0.003

block2837 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.57/0.57	21/21/1.00	0.0	0.0	1	0	1	0	19	19	5arm	1	nd	0.19	2	1	1	na	na

Clusters
Located in cluster 6: block2837_cand, block2838_cand

		reads	miRBase family seed
seed	--------------------UUCUGGG---------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------GTTCTGGGCAAAGCTTGGTCC--------------------------------------------------------------------------------	21	1
cbriggsae	ttggtccatagtttggcctGTTCTGGGCAAAGCTTGGTCCactttttgagccatttaagccattttgattcttctggagtgtcgcagcgtgtccagaactttcagtcgaaattggtccat
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065289
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064155
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065151
	----------------------------------------------------------------------------------------------------------------------------------	NM_061965
	----------------------------------------------------------------------------------------------------------------------------------	NM_072208
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075402
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021005
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026513
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067834
	----------------------------------------------------------------------------------------------------------------------------------	NM_067080
	----------------------------------------------------------------------------------------------------------------------------------	NM_001027721
	----------------------------------------------------------------------------------------------------------------------------------	NM_067021
	----------------------------------------------------------------------------------------------------------------------------------	NM_001026557
	----------------------------------------------------------------------------------------------------------------------------------	NM_214627
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001094113
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001091618
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034557
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_028737
	----------------------------------------------------------------------------------------------------------------------------------	NM_174568
	----------------------------------------------------------------------------------------------------------------------------------	NM_011235
	----------------------------------------------------------------------------------------------------------------------------------	NM_001028318
	----------------------------------------------------------------------------------------------------------------------------------	NM_171081
	----------------------------------------------------------------------------------------------------------------------------------	NM_065139
	----------------------------------------------------------------------------------------------------------------------------------	NM_075117
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061879
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	----------------------------------------------------------------------------------------------------------------------------------	NM_061817
	----------------------------------------------------------------------------------------------------------------------------------	NM_064619
	----------------------------------------------------------------------------------------------------------------------------------	NM_068079
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_072208
	----------------------------------------------------------------------------------------------------------------------------------	NM_075409
	----------------------------------------------------------------------------------------------------------------------------------	NM_075409
	----------------------------------------------------------------------------------------------------------------------------------	NM_001028390
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067659
cbriggsae	.(((.(((...((((((..((((((((((..((((((..((((((..(((....(((((....)))))..)))..))))))))).))).)))))))))).....))))))..))).))).	0.470 -39.10

cbriggsae

chromosome:chrIV:14219792:14219911:1

Same_strand|Intronic_non-coding|NM_065289|Y53G8AR.9 ## Opposite_strand|Intronic_non-coding|NM_061965|F08D12.1 ## Opposite_strand|Intronic_coding|NM_072208|K12B6.7 ## Same_strand|Intronic_coding|NM_067834|smf-3 ## {Repeats: no}

miR-Intess™

block2837_cand

block2837 [novel_randfoldOK]