miR-Intess: block2838

block2838_cand

Cloning frequencies
absolute	AF16
block2838_cand 3arm	1
normalized	AF16
block2838_cand 3arm	0.003

block2838 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	11	22	3arm	1	nd	0.29	3	1	1	na	na

Clusters
Located in cluster 6: block2837_cand, block2838_cand

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------UCUGAUU------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------------GTCTGATTTACTGGGTTTTCG-----------	21	1
cbriggsae	ttcctgttttatcgacctagctggaattggaatttcagaactcttctttggatttggattttgggatctagaaggttccggaggtGTCTGATTTACTGGGTTTTCGgattctggaga
	*********************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065289
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064155
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065151
	-------------------------------------------------------------------------------------------------------------------------------	NM_061965
	-------------------------------------------------------------------------------------------------------------------------------	NM_072208
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075402
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021005
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026513
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067834
	-------------------------------------------------------------------------------------------------------------------------------	NM_067080
	-------------------------------------------------------------------------------------------------------------------------------	NM_001027721
	-------------------------------------------------------------------------------------------------------------------------------	NM_067021
	-------------------------------------------------------------------------------------------------------------------------------	NM_001026557
	-------------------------------------------------------------------------------------------------------------------------------	NM_214627
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001094113
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001091618
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034557
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_028737
	-------------------------------------------------------------------------------------------------------------------------------	NM_174568
	-------------------------------------------------------------------------------------------------------------------------------	NM_011235
	-------------------------------------------------------------------------------------------------------------------------------	NM_001028318
	-------------------------------------------------------------------------------------------------------------------------------	NM_171081
	-------------------------------------------------------------------------------------------------------------------------------	NM_065139
	-------------------------------------------------------------------------------------------------------------------------------	NM_075117
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061879
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	-------------------------------------------------------------------------------------------------------------------------------	NM_061817
	-------------------------------------------------------------------------------------------------------------------------------	NM_064619
	-------------------------------------------------------------------------------------------------------------------------------	NM_068079
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_072208
	-------------------------------------------------------------------------------------------------------------------------------	NM_075409
	-------------------------------------------------------------------------------------------------------------------------------	NM_075409
	-------------------------------------------------------------------------------------------------------------------------------	NM_001028390
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067659
cbriggsae	((((.((((....(((((((...((((..((.((((.((((.(((((..((((((........))))))))))))))).))))...))..)))).)))))))...))))...)))).	0.990 -34.50

cbriggsae

chromosome:chrIV:14220147:14220263:1

Same_strand|Intronic_non-coding|NM_065289|Y53G8AR.9 ## Opposite_strand|Intronic_non-coding|NM_061965|F08D12.1 ## Opposite_strand|Intronic_coding|NM_072208|K12B6.7 ## Same_strand|Intronic_coding|NM_067834|smf-3 ## {Repeats: no}

miR-Intess™

block2838_cand

block2838 [novel_randfoldOK]