cel-mir-1829b
| absolute | CE1 |
| cel-mir-1829b 3arm | 0.333 |
| normalized | CE1 |
| cel-mir-1829b 3arm | 0.000 |
sblock81 (miRBase cel-mir-1829b) [miRNAknown_multiarm_DicerNOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-1829b | 0.001 | no | no | 0.36/0.39 | 22/23/1.00 | nd 0.0 | nd 0.0 | 0 1 | 0 0 | 0 1 | 0 0 | 0 0 | 4 6 | 5arm 3arm | 1 3 | nd nd | 0.17 0.29 | 2 3 | 1 | 1 | 2 | 0 |
| Member of family novel1 (seed AACCACU): cel-mir-1829c, cel-mir-1829b |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------AACCACU-------------- | 1 | novel |
| seed | -AGCGAUC------------------------------------------------------------------ | 0 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------CAACCACTGGAATTTCTCTATT | 22 | 1 | |
| cel-miR-1829b | AAGCGATC-----TTCTAGATGGTTGTA---------------------------------------------- | 23 | - |
| celegans | AAGCGATC-----TTCTAGATGGTTGTA---AAACATCGA-GTAT-----TACAACCACTGGAATTTCTCTATT | ||
| cremanei | TAGCTGTT-----TTCTGAGAGGGAATG---AAAAAACGATGCAT-----TTCAACCACTTTCATTTTCAGTTC | ||
| cbriggsae | AAGCGATCACAGATCTTGAAAGTCAATACCCAACCATCAA-GGATGAGTATCCAAGCTCTGACATCGTCGCCA- | ||
| *** * * * * * ** * * * * ** * *** * ** ** | |||
| +++++++++++++ +++++++++++++++ +++++++++ ++++ +++++++++++++++++++++++++++++ | F20D1.3 F20D1.3 F20D1.3 | ||
| celegans | .((.((.. ((((((.(((((((( (.((..... )).) ))))))))))))))..)).))... | 1.000 -21.90 | |
| cremanei | .(((((.. ...((((((((..(( (((..........) )))).)).))))))....))))). | 0.999 -12.40 | |
| cbriggsae | ..(((((..((((.((((.......((((.((.((..... )).)).)))).)))).)))).....))))).. | 0.873 -15.30 |
| celegans | chromosome:X:14977039:14977098:1 | Same_strand|Intronic_coding|F20D1.3|F20D1.3 ## F20D1.3|protein_coding|F20D1.3|F20D1.3 [Source:RefSeq_peptide;Acc:NP_510486] ## {SimpF: WRM0620cC04 1 fosmid,WRM0619cC06 1 fosmid,WRM063bH10 1 fosmid,WRM0632dA05 1 fosmid,WRM0621dB08 1 fosmid,WRM0635cA06 1 fosmid,WRM0637bE01 1 fosmid,WRM061cA02 1 fosmid,WRM065aD05 1 fosmid,WRM0618cH08 1 fosmid,WRM0625cA03 1 fosmid,CEOPX130 1 Operon} ## {MIR: cel-mir-1829b} |
| cremanei | chromosome:chrUn:20215887:20215986:-1 | intergenic |
| cbriggsae | chromosome:chrV:5457695:5457794:1 | Opposite_strand|Intronic_coding|NM_001027169 ## Same_strand|Intronic_coding|NM_070877 ## Same_strand|Exonic_coding|NM_073185 |
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