cel-mir-1829c
| absolute | CE1 |
| cel-mir-1829c 5arm | 2 |
| cel-mir-1829c 3arm | 0.333 |
| normalized | CE1 |
| cel-mir-1829c 5arm | 0.001 |
| cel-mir-1829c 3arm | 0.000 |
sblock67 (miRBase cel-mir-1829c) [miRNAknown_multiarm_DicerOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-1829c | 0.001 | no | no | 0.35/0.36 | 22/23/1.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 0 2 | 4 6 | 5arm 3arm | 1 3 | nd nd | 0.14 0.27 | 1 4 | 3 | 1 | 2 | 2 |
| Member of family novel1 (seed AACCACU): cel-mir-1829c, cel-mir-1829b |
| reads | miRBase family seed | ||
| seed | ----------AGCGAAA---------------------------------------------------------------------------------- | 2 | novel |
| seed | ---------------------------------------------------------A--------ACC-ACU-------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------AAGCGAAATTCAA----GATG----GTTGT------------------------------------------------------------ | 22 | 2 | |
| --------------------------------------------------------CA--------ACC-ACTGGAATT-----TCTCTATT------- | 22 | 1 | |
| cel-miR-1829c | ---------AAGCGAAATTCAA----GATG----GTTGTA----------------------------------------------------------- | 23 | - |
| celegans | ---------AAGCGAAATTCAA----GATG----GTTGTAAAACATC-GAGTACTACA--------ACC-ACTGGAATT-----TCTCTATTGC----- | ||
| cbriggsae | ---------AAGCGAAATG-------GATAAT--GATGAAAAAC----GGGCAACGAA--------TTC-ATTTCCCTT-----TCTCTC--------- | ||
| cjaponica | TGTGTTCACAAGCGAAATTCAGGTACGACGCTCCGATGCGGAACATTGGAGCGGCGTA--------CCCGATTTGAATT-----TCGCTTGTGAATCCA | ||
| ppacificus | ---------AAGCGAAA-----------------GATCATGGACAATTGAGAGATTCAGATCGTCTCACGAATTGCATGAAAAATCGATC--------- | ||
| ******** * * ** * * * * * * * ** * | |||
| +++++ +++++++++++++ ++++ +++++++++++++ ++++++++++ +++ +++++++++ ++++++++++ +++++ | F39B1.1 F39B1.1 F39B1.1 | ||
| celegans | .((.(((((((.( (.(( ((((((..((... ..))..)))) ))) ))).))))) )).))..... | 1.000 -20.20 | |
| cbriggsae | .((.((((.( ((.... ((((((...( (.....)).. ))) )))))).)) )).)). | 1.000 -10.20 | |
| cjaponica | ((..(((((((((((((((((((((((.((((((((((.....)))))))))).)))) )).....)))))) )))))))))))..)) | 1.000 -52.80 | |
| ppacificus | ...(((.. ..(((((..((((((((((((....))).)))))...)))))))))....)))... | 0.989 -12.90 |
| celegans | chromosome:X:15236283:15236344:-1 | Same_strand|Intronic_coding|F39B1.1|F39B1.1 ## F39B1.1|protein_coding|F39B1.1|F39B1.1 [Source:RefSeq_peptide;Acc:NP_510529] ## {SimpF: WRM0639bH04 -1 fosmid,WRM0635aF06 -1 fosmid,WRM0621bC05 -1 fosmid,WRM068aA02 -1 fosmid,WRM0611bA02 -1 fosmid,WRM0629dB10 -1 fosmid} ## {MIR: cel-mir-1829c} |
| cbriggsae | chromosome:chrIV:2565815:2565916:1 | Opposite_strand|Intronic_coding|NM_020714 ## {Repeats: CT-rich 1 64 1 class=Low_complexity} |
| cjaponica | chromosome:chrUn:59159085:59159170:1 | intergenic |
| ppacificus | chromosome:chrUn:164524218:164524319:1 | intergenic |
©2008 InteRNA Genomics B.V.