cel-mir-231
| absolute | CE1 |
| cel-mir-231 5arm | 2 |
| cel-mir-231 3arm | 24 |
| normalized | CE1 |
| cel-mir-231 5arm | 0.001 |
| cel-mir-231 3arm | 0.017 |
sblock27 (miRBase cel-mir-231) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-231 | 0.001 | no | no | 0.38/0.50 | 20/24/1.00 | 0.0 0.0 | 0.5 0.8 | 2 24 | 0 0 | 1 1 | 0 0 | 17 17 | 5 9 | 5arm 3arm | 1 1 | nd nd | 0.14 0.23 | 2 2 | 26 | 1 | 1 | 0 |
| Member of family miR-231/787 (seed AAGCUCG): cel-mir-231, cel-mir-787 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------AAGCUCG----------------------------------------------- | 24 | miR-231/787 |
| seed | ---------------------------UGACUGU------------------------------------------------------------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------------------------------------------------------TAAGCTCGTGATCAACAGGCAG--------------------------------- | 22 | 15 | |
| ---------------------------------------------------------------------TAAGCTCGTGATCAACAGGC----------------------------------- | 20 | 9 | |
| --------------------------CTGACTGTTTCAAAAGCTTG------------------------------------------------------------------------------ | 20 | 1 | |
| --------------------------CTGACTGTTTCAAAAGCTTGT----------------------------------------------------------------------------- | 21 | 1 | |
| cel-miR-231 | ---------------------------------------------------------------------TAAGCTCGTGATCAACAGGCAGAA------------------------------- | 24 | - |
| celegans | --------TAGCACCAC-AGGTTGTTCTGACTGTTTCAAAAGCTTGTAGTATCTTAATAAATAAACATATAAGCTCGTGATCAACAGGCAGAACAACTCGGTTTTGTG---------------- | ||
| cbriggsae | TTTGCTACTAGCACCTCAATGTTGTTCTGTCTGTTTCCATAGCTTATATTGT-------AAGGTACTTATAAGCTCGTGAACAACAGGCAGGACAACTGGAAGTGGTGTTTTTTTTCAGGCAGG | ||
| cjaponica | ---------CGCACCCC-TTGTGGTTCTGACTGTTTCAGTAGCTTATAGC---------CGTGGGCGTATAAGCTCGTGATCAACAGGCAGGACCACTTGGAAGTGTG---------------- | ||
| cbrenneri | --------------------------CTGACTGTTTCAAAAGCTTATATTGTTCGTTCAAAGTTACTTATAAGCTCGTGATCAACAGGCAG--------------------------------- | ||
| cremanei | -----ATCGAGCACCCCGATGTTGTTCTGACTGTTTCCATAGCTTATATTGTCTC----AAAATGCATATAAGCTCGTGAACAACAGGCAGGACAACTGGTCTTTTTGGTGTGCATTTTGAT-- | ||
| *** ******* ***** ** * ************* ********** | |||
| celegans | ..(((..(( .((((((((((.((((((((..((((((((.(((........)))....))))))))..)))..))))).))))))))))..))..))). | 1.000 -32.60 | |
| cbriggsae | .(((((...((((((((...(((((((((((((((..(((((((((((..(( (...))).)))))))).)))...)))))))))))))))..))...))))))........))))). | 0.995 -42.70 | |
| cjaponica | (((((.(( ..(((((((((.((((((((..(((((((((( (...))).))))))))..)))..))))).)))))))))..))..))))) | 1.000 -43.10 | |
| cbrenneri | (((.((((((((..((((((((..((............)).))))))))..)))..))))).))) | 0.999 -17.20 | |
| cremanei | (((((((((.((((.(((((((((.(((((..(((((((((((.(((... .....))))))))))).)))...))))).)))))))))........)))).))))...))))) | 0.996 -38.00 |
| celegans | chromosome:III:7544981:7545079:-1 | intergenic ## {SimpF: WRM0636cE06 -1 fosmid,WRM0622cC06 -1 fosmid,WRM0630bD02 -1 fosmid,WRM0616aE11 -1 fosmid,WRM0627cC08 -1 fosmid,WRM0612cA07 -1 fosmid,WRM068bF09 -1 fosmid} ## {MIR: cel-mir-231} |
| cbriggsae | chromosome:chrIII:9825061:9825177:1 | Opposite_strand|Intronic_coding|NM_001022613 ## Same_strand|Intronic_coding|NM_065267 ## {MIR: cbr-mir-231} |
| cjaponica | chromosome:chrUn:140689401:140689489:-1 | intergenic |
| cbrenneri | chromosome:chrUn:17428268:17428406:1 | Same_strand|Intronic_coding|NM_209426 |
| cremanei | chromosome:chrUn:5285616:5285728:1 | intergenic |
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