C.elegans small RNAs

miR-Intess™

miR classification

miR expression

cel-mir-787

cel-mir-787

Cloning frequencies
absolute	CE1
cel-mir-787 3arm	1
normalized	CE1
cel-mir-787 3arm	0.001

cel-mir-787 relative cloning frequencies

block8488 (miRBase cel-mir-787) [miRNAknown_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-787	0.001	no	no	0.35/0.35	23/23/1.00	0.0	0.0	1	0	1	0	14	6	3arm	1	nd	0.22	4	1	1	na	na

Families
Member of family miR-231/787 (seed AAGCUCG): cel-mir-231, cel-mir-787

block8488 hairpin

		reads	miRBase family seed
seed	-----------------------------------------------------------AAGCUCG--------------------------------------	1	miR-231/787
		len	cloning frequencies
			CE1
cel-miR-787	----------------------------------------------------------TAAGCTCGTTTTAGTAT--CTTTCG---------------------	23	1
celegans	---GATGTATCAGTGGACGAAAGATAC-ATACGATCTTACATC-TTCAAAATGGTATGTAAGCTCGTTTTAGTAT--CTTTCGTCTCTG-------ATCACATT
cbriggsae	-----------TGGAGAAGAAGGAAACTAGACAATCTTACATAGCTCAAAATAATCTGTAAGCTCGTCTTAGTTTTCCTCTCCTCTCTA-------GGGAATAT
cbrenneri	GTGAGATTCTTGGTGGAAGAAAGGAACCATGCGATCTTACAACAATAAAAGTG---TGTAAGCTCGTCATTGTTT-CCTTTCTTCTCCAACTCACTGCTGTTCT
	* * * ** * * ******** * *** * *********** * ** * **** *
celegans	((((((((((.((((((((((((( ..((((.(((((((( (.......)).))))))).))))....)))) )))))))))))) )).)))))	1.000 -39.70
cbriggsae	((((((.((((((((((((((...((((((...............))))))...)))).))))).))).)).)))))) ........	0.991 -22.96
cbrenneri	(((((....((((.(((((((((((((.((((((.(((((.(((.......)) )))))).))).))).))). ))))))))))))))))))).........	1.000 -37.60

celegans	chromosome:X:11294636:11294725:1	intergenic ## {SimpF: WRM0628cG10 1 fosmid,WRM0610dC11 1 fosmid,WRM061aE05 1 fosmid} ## {MIR: cel-mir-787}
cbriggsae	chromosome:chrX:5375314:5375399:-1	Opposite_strand\|Intronic_coding\|NM_001105250 ## Same_strand\|Intronic_coding\|NM_072374 ## {MIR: cbr-mir-787}
cbrenneri	chromosome:chrUn:55916:56015:1	intergenic

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