miR-Intess: cel-mir-233

cel-mir-233

Cloning frequencies
absolute	CE1
cel-mir-233 3arm	25
normalized	CE1
cel-mir-233 3arm	0.017

block7892 (miRBase cel-mir-233) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-233	0.001	no	no	0.55/0.59	20/22/1.00	0.0	0.3	24	0	1	0	16	5	3arm	1	nd	0.14	1	25	1	na	na

Families
Member of family miR-233/356/87 (seed UGAGCAA): cel-mir-233, cel-mir-87

		reads	miRBase family seed
seed	---------------------------------------------------------------UGAGCAA-------------------------------	25	miR-233/356/87
		len	cloning frequencies
			CE1
	--------------------------------------------------------------TTGAGCAATGCGCATGTGCGGG-----------------	22	17
cel-miR-233	--------------------------------------------------------------TTGAGCAATGCGCATGTGCGG------------------	21	7
	--------------------------------------------------------------TTGAGCAATGCGCATGTGCG-------------------	20	1
celegans	ATATAGCATCTTTCTGTCTCGCCCATCCCGTTGCTCCAATATTCTAAC--AACAAGTGATTATTGAGCAATGCGCATGTGCGGGATAGACTGATGGCTGC-
cbriggsae	-----------------CCCGCGCATCCCTTTGTTCCAATATTCAAACCAGTAGAAAGATTATTGAGCAATGCGCATGTGCGGG-----------------
cjaponica	---CAGCGACCTTCCGTCTCGCCCATCCCTTTGCTCC-ATATC-------GATTCATGATTATTGAGCAATGCGCATGTGCGGGACGGATTGAGCGCTG--
cbrenneri	-----GCGTCTTTCTGTCTCGCCCATCCCGTTGTTCCAATATTCCAAC--AACAAGTGATTATTGAGCAATGCGCATGTGCGGGACAGACTGATGTCTGCT
cremanei	-----------------CCCGCTCATCCTGTTGTTCCAATATTCCAAC-AGCCCAGTGATTATTGAGCAATGCGCATGTGCGGG-----------------
	* * * * * *************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	W03G11.4.2 W03G11.4 W03G11.4
	+++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	W03G11.4.1 W03G11.4 W03G11.4
celegans	...(((((((..((((((((((.(((.(((((((((.((((.((.... .......)).)))))))))))).).))).))))))))))..))).)))).	1.000 -39.40
cbriggsae	(((((((((....(((((.(((((.((.............)).)))))))))).....)))))))))	0.999 -21.92
cjaponica	(((((....((((((((((.(((....((((((. ((((( (.....)))).)).)))))).....))).)))))))))).....)))))	1.000 -36.90
cbrenneri	(((((..((((((((((.(((..(((((((.(((((.((..(( .....)))).))))))))))))...))).))))))))))..))))).....	1.000 -35.60
cremanei	(((((.(((..(((((((.(((((.((..(( ......)))).))))))))))))...))).)))))	0.994 -19.60

celegans	chromosome:X:12078510:12078607:-1	Same_strand\|Intronic_coding\|W03G11.4.1\|W03G11.4 ## W03G11.4\|protein_coding\|W03G11.4\|W03G11.4 [Source:RefSeq_peptide;Acc:NP_510019] ## {SimpF: WRM066dD06 -1 fosmid,WRM0618aH01 -1 fosmid,WRM0626dA10 -1 fosmid,WRM0637aC08 -1 fosmid,WRM0638bC07 -1 fosmid,WRM069aG02 -1 fosmid,WRM0631cH03 -1 fosmid,WRM0635cH03 -1 fosmid,WRM068bB09 -1 fosmid} ## {MIR: cel-mir-233}
cbriggsae	chromosome:chrX:1703761:1703898:1	Same_strand\|Intronic_coding\|NM_001011629 ## Opposite_strand\|Intronic_coding\|NM_009152 ## {MIR: cbr-mir-233}
cjaponica	chromosome:chrUn:7867828:7867915:1	Same_strand\|Intronic_coding\|NM_001071380 ## Opposite_strand\|Intronic_coding\|NM_001093204
cbrenneri	chromosome:chrUn:19160377:19160470:1	Same_strand\|Intronic_coding\|NM_001030940 ## Opposite_strand\|Intronic_coding\|NM_007735
cremanei	chromosome:chrUn:72771484:72771621:1	Same_strand\|Intronic_coding\|NM_077618 ## Opposite_strand\|Intronic_coding\|NM_009930

miR-Intess™

cel-mir-233

block7892 (miRBase cel-mir-233) [miRNAknown_cloningHIGH_randfoldOK]