cel-mir-46
| absolute | CE1 |
| cel-mir-46 5arm | 64 |
| cel-mir-46 3arm | 512 |
| normalized | CE1 |
| cel-mir-46 5arm | 0.045 |
| cel-mir-46 3arm | 0.358 |
sblock33 (miRBase cel-mir-46) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-46 | 0.001 | no | no | 0.45/0.55 | 18/23/0.99 | 0.0 0.0 | 0.0 0.0 | 59 488 | 0 0 | 1 1 | 0 0 | 14 16 | 7 12 | 5arm 3arm | 1 1 | nd nd | 0.18 0.14 | 2 3 | 576 | 1 | 2 | 1 |
| Member of family miR-46/47 (seed GUCAUGG): cel-mir-46, cel-mir-47 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------GUCAUGG------------------------------------------------- | 499 | miR-46/47 |
| seed | -----------------------------------AGAGAGC------------------------------------------------------------------------------------------------ | 62 | novel |
| seed | -----------------------------------------------------------------------------------UCAUGGA------------------------------------------------ | 9 | novel |
| seed | --------------------------------------------------------------------------------------UGGAGUC--------------------------------------------- | 4 | novel |
| seed | ---------------------------------------AGCCGUC-------------------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------------------------------------------------------------------TGTCATGGAGTCGCTCTCTTC------------------------------------ | 21 | 488 | |
| ----------------------------------AAGAGAGCCGTCTATTGACAGT---------------------------------------------------------------------------------- | 22 | 59 | |
| ----------------------------------------------------------------------------------GTCATGGAGTCGCTCTCTTCA----------------------------------- | 21 | 7 | |
| cel-miR-46 | ---------------------------------------------------------------------------------TGTCATGGAGTCGCTCTCTTCA----------------------------------- | 22 | 5 |
| -------------------------------------------------------------------------------------ATGGAGTCGCTCTCTTCA----------------------------------- | 18 | 4 | |
| ---------------------------------------------------------------------------------TGTCATGGAGTCGCTCTCTTCAG---------------------------------- | 23 | 4 | |
| --------------------------------------GAGCCGTCTATTGACAGTT--------------------------------------------------------------------------------- | 19 | 2 | |
| ----------------------------------AAGAGAGCCGTCTATTGACAG----------------------------------------------------------------------------------- | 21 | 2 | |
| ----------------------------------------------------------------------------------GTCATGGAGTCGCTCTCTTC------------------------------------ | 20 | 1 | |
| ----------------------------------AAGAGAGCCGTCTATTGAC------------------------------------------------------------------------------------- | 19 | 1 | |
| ----------------------------------------------------------------------------------GTCATGGAGTCGCTCTCTTCAG---------------------------------- | 22 | 1 | |
| ---------------------------------------------------------------------------------TGTCATGGAGTCGCTCTCT-------------------------------------- | 19 | 1 | |
| ---------------------------------------------------------------------------------TGTCATGGAGTCGCTCTCTT------------------------------------- | 20 | 1 | |
| celegans | --------------------CTGAGGTGAAGCTGAAGAGAGCCGTCTATTGACAGTTCAAGACCACGAGTCGTTGTG-TGCTGTCATGGAGTCGCTCTCTTCAGATGATCCGGTCAAT-------------------- | ||
| cbriggsae | ---GGTAAGTTGA--AGAGATACAAGTGAAGCTGAAGAGAGCCGTCTATTGACAGTTC--GCTTGTT-----TCATG-TGCTGTCATGGAGTCGCTCTCTTCAGATGATCTGAATCTAAATGTTATATTTTCC----- | ||
| cjaponica | -GCGGTAAGTTGGCCAAAAGACCGGGTGAAGCTGAAGAGAGCCGTCCTTTGACAGTTC--GTCCACGTGGAATATCG-TGCTGTCATGGAGTCGCTCTCTTCAGATGACCACGGTCTTTCTTGGTTTTTTCTTTTTGT | ||
| cbrenneri | -------------------------------CTGAAGAGAGCCGTCTATTGACAGTTC--GTCTCTGTTCAGTCAGG-TACTGTCATGGAGTCGCTCTCTTCAGATGATCTCTTGC---------------------- | ||
| ppacificus | AGACACCAGGACCCCCGGCACCACGCAGAGACCGAAGAGAGCCTTCTGTTGACAGTGC-GGGCCGTTGGTGCTAATGCTATTGTCATGGAGTCGCTCTCTTCAG--GCTTGTGGTCCTCAGGGTACGGTAGCT----- | ||
| cremanei | ---------------------------------GAAGAGAGCCGTCTATTGACAGTTC--GTTTCTA--TACTTATG-TACTGTCATGGAGTCGCTCTCTTC------------------------------------ | ||
| ********** ** ******** * * * * * ********************* | |||
| celegans | ....((.....(((((((((((..(((((.((((((.((((((.....))).))).. .)))))))))))...))))))))))).....))....... | 1.000 -39.00 | |
| cbriggsae | ((.((((((( ..((((...((.....(((((((((((..((((.(((((((.. ((..... ....) ))))))))))))...))))))))))).....))..)))).....))).)))).)) | 0.946 -35.50 | |
| cjaponica | ((((.(((..((((((((((((((((....(((((((((((..(((..(((((((.( ((((....)))....)) .))))))).)))...)))))))))))...))).))))))))..)))))....))).)))) | 0.999 -59.60 | |
| cbrenneri | (((((((((((..((((.(((((((.. ...((((......)))) .)))))))))))...)))))))))))............ | 0.995 -33.10 | |
| ppacificus | ((..(((...((((..((.(((((...(((.(((((((((((((((...((((((((( .(((.......)))...)).))))))).))))..))))))))).) )))))))))))...))))..)))..)) | 0.996 -52.40 | |
| cremanei | (((((((((..((((.(((((((.( ((..... .....))) .)))))))))))...))))))))) | 1.000 -26.70 |
| celegans | chromosome:III:13660395:13660491:1 | intergenic ## {SimpF: WRM066cA03 1 fosmid,WRM0629dF02 1 fosmid,WRM0640dG12 1 fosmid,WRM0614aE06 1 fosmid} ## {MIR: cel-mir-46} |
| cbriggsae | chromosome:chrIII:7878482:7878601:1 | Same_strand|Intronic_coding|NM_005249 ## {MIR: cbr-mir-46} |
| cjaponica | chromosome:chrUn:55670810:55670943:1 | Same_strand|Intronic_coding|NM_137355 |
| cbrenneri | chromosome:chrUn:26379439:26379520:-1 | Same_strand|Intronic_coding|NM_001043931 |
| ppacificus | chromosome:chrUn:163065258:163065387:1 | intergenic |
| cremanei | chromosome:chrUn:22211359:22211495:-1 | Same_strand|Intronic_coding|NM_001104800 |
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