cel-mir-47
| absolute | CE1 |
| cel-mir-47 5arm | 121 |
| cel-mir-47 3arm | 168 |
| normalized | CE1 |
| cel-mir-47 5arm | 0.085 |
| cel-mir-47 3arm | 0.117 |
sblock80 (miRBase cel-mir-47) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-47 | 0.001 | no | no | 0.39/0.61 | 18/22/0.98 | 0.0 0.0 | 0.0 0.0 | 107 162 | 0 0 | 1 1 | 0 0 | 18 16 | 5 9 | 5arm 3arm | 1 1 | nd nd | 0.18 0.14 | 2 3 | 289 | 1 | 2 | 1 |
| Member of family miR-46/47 (seed GUCAUGG): cel-mir-46, cel-mir-47 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------------GUCAUGG------------------------------------------------------ | 166 | miR-46/47 |
| seed | ---------------------------------------AGAGAGC------------------------------------------------------------------------------------------------------ | 120 | novel |
| seed | -------------------------------------------------------------------------------------------UGGAGGC-------------------------------------------------- | 1 | novel |
| seed | ----------------------------------------------------------------------------------------UCAUGGA----------------------------------------------------- | 1 | novel |
| seed | ----------------------------------------GAGAGCA----------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------------------------------------------------------------------------------------TGTCATGGAGGCGCTCTCTTC----------------------------------------- | 21 | 162 | |
| --------------------------------------AAGAGAGCAGTCTATTGACAGT---------------------------------------------------------------------------------------- | 22 | 107 | |
| --------------------------------------AAGAGAGCAGTCTATTGACAG----------------------------------------------------------------------------------------- | 21 | 9 | |
| --------------------------------------AAGAGAGCAGTCTATTGAC------------------------------------------------------------------------------------------- | 19 | 3 | |
| cel-miR-47 | --------------------------------------------------------------------------------------TGTCATGGAGGCGCTCTCTTCA---------------------------------------- | 22 | 2 |
| --------------------------------------------------------------------------------------TGTCATGGAGGCGCTCTCTT------------------------------------------ | 20 | 1 | |
| ---------------------------------------------------------------------------------------GTCATGGAGGCGCTCTCTTCA---------------------------------------- | 21 | 1 | |
| ---------------------------------------AGAGAGCAGTCTATTGACAGT---------------------------------------------------------------------------------------- | 21 | 1 | |
| ------------------------------------------------------------------------------------------ATGGAGGCGCTCTCTTCA---------------------------------------- | 18 | 1 | |
| --------------------------------------AAGAGAGCAGTCTATTGA-------------------------------------------------------------------------------------------- | 18 | 1 | |
| --------------------------------------------------------------------------------------TGTCATGGAGGCGCTCTC-------------------------------------------- | 18 | 1 | |
| celegans | --------------------GAGAGCCGACTGAAACTGAAGAGAGCAGTCTATTGACAGTCGG--TTACT----CGAAATCTTTACTGTCATGGAGGCGCTCTCTTCAGAT-----GATGTCTGGCCC-------------------- | ||
| cbriggsae | ---------AAGTTTAAATTAATAGCTGAGGAAGACTGAAGGGAGCTTTCTTTTGACAGTTCG----ATT----TCGAACTCTTACTGTCATGGAGGCGCTCTCTTCAGGT-----GAACTCTGGCTCTTTTTTTTTGTTTTT----- | ||
| cbrenneri | ------------------------GCCGAGAGAAGCTGAAGGGAGCTTTCTGGTGACAGTTCG----ATT----TTGAACTCTTACTGTCATGGAGGCGCTCTCTTCAGAT-----GATCTTTGGCTGCTTTTT-------------- | ||
| cjaponica | CAGCTTGGTAAGTTTGGGTTTACAGCTCTGAAAAGCTGAAGAGAGCAGTCTATTGACAGTTGGTTCTACT----CCAA---CTCACTGTCATGGAGGCGCTCTCTTCAGAT-----GATCCGACGTTGTTACGTTATTTTTTAAGTTG | ||
| ppacificus | AGACACCAGGACCCCCGGCACCACGC----AGAGACCGAAGAGAGCCTTCTGTTGACAGTGCGGGCCGTTGGTGCTAA--TGCTATTGTCATGGAGTCGCTCTCTTCAGGCTTGTGGTCCTCAGGGTACGGTAGCT------------ | ||
| cremanei | ---TAAGGTAAGTTTCGA-AAAAAGCCGAGTGAGACTGAAGAGAGCATTCTGTTGACAGTTCG----ATT----CCGAACTCCTACTGTCATGGAGGCGCTCTCTTCAGGT-----GATCTCTGGCTAGTTTTTCTTTGTTTTTCTTG | ||
| ** * * **** **** *** ******* * * * * ********** ************ * * | |||
| celegans | ....((((((.....(((((((((((.((((..(((((((.(( ((... ...))))...)))))))...))))))))))))))).. ...))).))).. | 1.000 -42.50 | |
| cbriggsae | ......(((..((.(((((((.....((((((((((((((((..(((((((..( (.. ......))..))))))).))))).))))))))))).. ...))).)))).))..)))........ | 0.994 -40.70 | |
| cbrenneri | (((((((....((((((((((((((((.((((((((..( (.. ......))..))))))))))))).))))))))))).. ..)))).)))........ | 1.000 -41.80 | |
| cjaponica | ((((((((.((((....((..(((((((.((....(((((((((((.((((..(((((((.((((..... ..)) )).)))))))...))))))))))))))).. ..)).)).))))).))...)))).)))))))) | 0.906 -51.50 | |
| ppacificus | ((..(((...((((..((.(((((.. .(((.(((((((((((((((...(((((((((.(((.......))).. .)).))))))).))))..))))))))).))))))))))))...))))..)))..)) | 0.996 -52.40 | |
| cremanei | (((((........(( (((((((((((.....(((((((((((.(((((.(((((((..( (.. ......))..))))))))))))..))))))))))).. ...))).))))..))))))........))))) | 0.999 -47.19 |
| celegans | chromosome:X:13921173:13921269:1 | intergenic ## {SimpF: WRM0613aE03 1 fosmid,WRM062aA05 1 fosmid,WRM068dG07 1 fosmid,WRM0610cB07 1 fosmid,WRM068bE04 1 fosmid,WRM0641cE06 1 fosmid,WRM061cB05 1 fosmid,WRM0632cF06 1 fosmid,WRM0633bD12 1 fosmid,WRM0611dE11 1 fosmid,WRM0619cH08 1 fosmid,WRM061bE03 1 fosmid,WRM0638dG01 1 fosmid,WRM0632cC01 1 fosmid,WRM0630aB10 1 fosmid} ## {MIR: cel-mir-47} |
| cbriggsae | chromosome:chrX:19620632:19620752:1 | Opposite_strand|Intronic_coding|NM_072416 ## {MIR: cbr-mir-47} |
| cbrenneri | chromosome:chrUn:53134808:53134904:1 | Same_strand|Intronic_coding|NM_001047803 |
| cjaponica | chromosome:chrUn:36289907:36290042:1 | Opposite_strand|Intronic_coding|NM_134474 |
| ppacificus | chromosome:chrUn:163065258:163065387:1 | intergenic |
| cremanei | chromosome:chrUn:96562078:96562208:1 | intergenic |
©2008 InteRNA Genomics B.V.